DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment trv and AT3G14100

DIOPT Version :9

Sequence 1:	NP_001163754.3	Gene:	trv / 43362	FlyBaseID:	FBgn0085391	Length:	651	Species:	Drosophila melanogaster
Sequence 2:	NP_188026.1	Gene:	AT3G14100 / 820626	AraportID:	AT3G14100	Length:	427	Species:	Arabidopsis thaliana

Alignment Length:	500	Identity:	147/500 - (29%)
Similarity:	203/500 - (40%)	Gaps:	157/500 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly   143 PMQQQHPQQQQHDLHMQHPLTPSEDCKPLLHAKSVPPPPQPPPMLTHFQAMMQPPPLPPSPM--M 205
            |..:||.||||....||.        :.|:...|:..|           .::.||.|.|.|.  :
plant     4 PRLKQHQQQQQQQAMMQQ--------QALMQQHSLYHP-----------GVLAPPQLEPVPSGNL 49

  Fly   206 PPQSFGCPLPS----------RTPATPPL-----PGTYRVQSLK------------------SAA 237
            || .|.   ||          .|..|.||     ..|..|:|.|                  |||
plant    50 PP-GFD---PSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAA 110

  Fly   238 AAAVSAYQRNGKLPRNLPALRAMEMALRTN-SFATPPAPHSLPLPPPHAARTEGGGQDMEDSDEE 301
            .|.:|.   ||:        ......::.| ::||                    || .||:.
plant   111 LAILSL---NGR--------HLFGQPIKVNWAYAT--------------------GQ-REDTS-- 141

  Fly   302 MEYMPPLHKQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEA 366
                    ..|:|||||||.|:....|.::|:.|...||.||:.|.:|.:|:|:|||||..:.:|
plant   142 --------SHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 198

  Fly   367 ESAITAMNGQWLGSRSIRTNWATR-------KPPASKENIKPLTF------DEVYNQSSPSN--- 415
            ::||..|||:||.||.||.||||:       |..:..:::..||.      .|..|:.:|.|
plant   199 QTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQ 263

  Fly   416 -CTVYVGGVNSALTALSEEVLQKTFAPYGA--IQEIRVFKDKGYAFVRFSTKEAATHAI-VGVHN 476
             .|||||.:...:|.|.   |.:.|...||  |:|:||.:|||:.|||::|...|..|| :|
plant   264 FTTVYVGNLAPEVTQLD---LHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMG--- 322

  Fly   477 TEINAQP------VKCSWGKESGDPNNAQTIATQALNSAAAAAAGFPYGVGAAAAAAAYGQQL-- 533
               |.||      :|||||.:...|..    |:..|...|.|    |....:||....|.:||
plant   323 ---NTQPYLFNRQIKCSWGNKPTPPGT----ASNPLPPPAPA----PVPGLSAADLLNYERQLAL 376

  Fly   534 ---AATGCWYSPTPTYP--------ASSATAAAVTPAAASAAAVQ 567
               |:..........:|        |:.||||.......:.||.|
plant   377 SKMASVNALMHQQGQHPLRQAHGINAAGATAAMYDGGFQNVAAAQ 421

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
trv	NP_001163754.3	RRM2_TIA1_like	313..387	CDD:240799	36/73 (49%)
trv	NP_001163754.3	RRM3_TIA1_like	416..491	CDD:240800	34/83 (41%)
AT3G14100	NP_188026.1	RRM1_TIA1_like	61..131	CDD:240798	16/80 (20%)
		ELAV_HUD_SF	70..323	CDD:273741	95/303 (31%)
		RRM2_PUB1	145..219	CDD:241063	36/73 (49%)
		RRM3_TIA1_like	265..340	CDD:240800	34/83 (41%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	77	1.000	Domainoid score	I3083
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	189	1.000	Inparanoid score	I1394
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1066369at2759
OrthoFinder	1	1.000	-	-		FOG0000924
OrthoInspector	1	1.000	-	-		mtm1150
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X831
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	9	8.970