Sequence 1: | NP_001163754.3 | Gene: | trv / 43362 | FlyBaseID: | FBgn0085391 | Length: | 651 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_008855.1 | Gene: | SRSF1 / 6426 | HGNCID: | 10780 | Length: | 248 | Species: | Homo sapiens |
Alignment Length: | 214 | Identity: | 43/214 - (20%) |
---|---|---|---|
Similarity: | 73/214 - (34%) | Gaps: | 79/214 - (36%) |
- Green bases have known domain annotations that are detailed below.
Fly 306 PPLHKQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSK----GYGFVSFIKKSEA 366
Fly 367 ESAITAMNGQWLGSRSIRTNW------------------ATR---KPPASKENIKPLTFDEVYNQ 410
Fly 411 SSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIR-------------VFKDKGYAFVRFS 462
Fly 463 TKEAATHAIVGVHNTEINA 481 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
trv | NP_001163754.3 | RRM2_TIA1_like | 313..387 | CDD:240799 | 20/77 (26%) |
RRM3_TIA1_like | 416..491 | CDD:240800 | 17/79 (22%) | ||
SRSF1 | NP_008855.1 | RRM1_SRSF1 | 12..90 | CDD:410010 | 20/84 (24%) |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 88..134 | 10/78 (13%) | |||
RRM2_SRSF1 | 113..196 | CDD:410160 | 20/104 (19%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 191..248 | ||||
Interaction with SAFB1 | 198..247 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |