DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment trv and nonA-l

DIOPT Version :9

Sequence 1:	NP_001163754.3	Gene:	trv / 43362	FlyBaseID:	FBgn0085391	Length:	651	Species:	Drosophila melanogaster
Sequence 2:	NP_001262646.1	Gene:	nonA-l / 42026	FlyBaseID:	FBgn0015520	Length:	630	Species:	Drosophila melanogaster

Alignment Length:	201	Identity:	48/201 - (23%)
Similarity:	79/201 - (39%)	Gaps:	56/201 - (27%)

- Green bases have known domain annotations that are detailed below.

  Fly   290 GGGQDMED---SDEEMEYMPPLHK--------------QFHIFVGDLSSEIETQQLREAFTPFGE 337
            ||||..||   :...::...|.|:              :..::||:|:|:.....|||.|.|:||
  Fly   226 GGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGE 290

  Fly   338 ISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPASKENIKPL 402
            |.|  :..:|:    |.:.|:.......||.|..|::|.....|.:|..:|
  Fly   291 IGD--IFSNPE----KNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFA-------------- 335

  Fly   403 TFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF-----KDKGYAFVRFS 462
                       .|..|.|..:|.   .:|.|:|.::|..:|.|:...:.     |..|...|.|:
  Fly   336 -----------PNAIVRVTNLNQ---FVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFA 386

  Fly   463 TKEAAT 468
            .|.:|:
  Fly   387 KKSSAS 392

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
trv	NP_001163754.3	RRM2_TIA1_like	313..387	CDD:240799	23/73 (32%)
trv	NP_001163754.3	RRM3_TIA1_like	416..491	CDD:240800	15/58 (26%)
nonA-l	NP_001262646.1	RRM1_p54nrb_like	264..334	CDD:240778	23/75 (31%)
		RRM2_p54nrb_like	339..418	CDD:240779	15/57 (26%)
		NOPS_NONA_like	409..508	CDD:240580
		OmpH	<479..578	CDD:281871
		DUF4472	479..559	CDD:291409
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910