DRSC/TRiP Functional Genomics Resources

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Protein Alignment trv and srsf6a

DIOPT Version :9

Sequence 1:NP_001163754.3 Gene:trv / 43362 FlyBaseID:FBgn0085391 Length:651 Species:Drosophila melanogaster
Sequence 2:XP_005161979.1 Gene:srsf6a / 406775 ZFINID:ZDB-GENE-040426-2824 Length:400 Species:Danio rerio


Alignment Length:85 Identity:21/85 - (24%)
Similarity:43/85 - (50%) Gaps:9/85 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   314 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWL 378
            :::|.||..:..:.::..|:.:|::.:.       .||: |||||.|....:|:.|:..:||:.|
Zfish     4 VYIGRLSYHVREKDIQRFFSGYGKLLEV-------DLKN-GYGFVEFEDTRDADDAVYELNGKEL 60

  Fly   379 GSRSIRTNWATRKPPASKEN 398
            ....:....| |.|...:::
Zfish    61 CGERVMVEHA-RGPRRDRDS 79

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trvNP_001163754.3 RRM2_TIA1_like 313..387 CDD:240799 18/72 (25%)
RRM3_TIA1_like 416..491 CDD:240800
srsf6aXP_005161979.1 RRM <3..137 CDD:223796 21/85 (25%)
RRM_SF 3..72 CDD:302621 19/76 (25%)
RRM2_SRSF4_like 135..206 CDD:241044
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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