DRSC/TRiP Functional Genomics Resources

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Protein Alignment trv and hnrnpa1b

DIOPT Version :10

Sequence 1:NP_001163754.3 Gene:trv / 43362 FlyBaseID:FBgn0085391 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_956398.3 Gene:hnrnpa1b / 378453 ZFINID:ZDB-GENE-030912-14 Length:403 Species:Danio rerio


Alignment Length:293 Identity:66/293 - (22%)
Similarity:107/293 - (36%) Gaps:68/293 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   314 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWL 378
            :|:|.||.|.....||..|..:|.::||.|::||.|.:|:|:|||::....|..:::.|...: :
Zfish    16 LFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMDARPHK-V 79

  Fly   379 GSRSIRTNWATRKPPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYG 443
            ..|.:....|..:..:|    ||.....|..        ::|||:..   ...|..|:..|..:|
Zfish    80 DGRLVEPKRAVSREDSS----KPFAHTTVKK--------IFVGGIKD---DTEENHLRDYFDQFG 129

  Fly   444 AIQEIRVFKD------KGYAFVRFSTKEAAT-------HAIVGVHNTEINAQPVKCSWGKESGDP 495
            .|:.:.:..|      :|:|||.|...::..       |.:.| ||.|:.               
Zfish   130 KIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNG-HNCEVR--------------- 178

  Fly   496 NNAQTIATQALNSAAAAAAGFPYGVGAAAAAAAYGQQLAATGCWYSPTPTYPASSATAAAVTPAA 560
                    :||:....|..|...|.|.......:.:        |.....|.....       ..
Zfish   179 --------KALSKQEMANTGRGGGGGGGGDRGNFNR--------YGNNGGYNNDFG-------GG 220

  Fly   561 ASAAAVQNQFLQGIQGYHFGQYGGYQQGYMGMG 593
            .........|.:|.:|.:||..||...||.|.|
Zfish   221 GGGGNRDGYFGRGGRGNNFGGGGGGGGGYGGGG 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trvNP_001163754.3 RRM2_TIA1_like 313..387 CDD:409789 23/72 (32%)
RRM3_TIA1_like 416..489 CDD:409790 19/85 (22%)
hnrnpa1bNP_956398.3 None

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