DRSC/TRiP Functional Genomics Resources

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Protein Alignment trv and tra2

DIOPT Version :10

Sequence 1:NP_001163754.3 Gene:trv / 43362 FlyBaseID:FBgn0085391 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster


Alignment Length:200 Identity:48/200 - (24%)
Similarity:86/200 - (43%) Gaps:22/200 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 QSLKSAAAAAVSAYQRNGKLPRNLPALRAMEMALRTNSFATPPAPHSLPLPPPHAARTEG-GGQD 294
            :|..|::|...|:..::.:...:....|..:   |::|.....:..|...|||......| ..:|
  Fly    21 RSASSSSAGTTSSGHKDRRSDYDYCGSRRHQ---RSSSRRRSRSRSSSESPPPEPRHRSGRSSRD 82

  Fly   295 MEDSDEEMEYMPPLHKQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVS 359
            .|...:..|: |...:...:|  .|::.....::||.|..:|.|...::|.|.||.:|:|:.|:.
  Fly    83 RERMHKSREH-PQASRCIGVF--GLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIY 144

  Fly   360 FIKKSEAESAITAMNGQWLGSRSIRTNWA------TRKP-------PASK--ENIKPLTFDEVYN 409
            |.|.|:|.:|..:.:|..:..|.||.:::      |..|       |..|  .:..|.....||:
  Fly   145 FEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGRQPRGKAPRSFSPRRGRRVYH 209

  Fly   410 QSSPS 414
            ..|.|
  Fly   210 DRSAS 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trvNP_001163754.3 RRM2_TIA1_like 313..387 CDD:409789 23/73 (32%)
RRM3_TIA1_like 416..489 CDD:409790
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 23/80 (29%)
Blue background indicates that the domain is not in the aligned region.

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