DRSC/TRiP Functional Genomics Resources

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Protein Alignment trv and HNRNPD

DIOPT Version :10

Sequence 1:NP_001163754.3 Gene:trv / 43362 FlyBaseID:FBgn0085391 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_112738.1 Gene:HNRNPD / 3184 HGNCID:5036 Length:355 Species:Homo sapiens


Alignment Length:333 Identity:75/333 - (22%)
Similarity:123/333 - (36%) Gaps:99/333 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 TEGGGQDME---------DSDEEMEYMPPLH--------KQFHIFVGDLSSEIETQQLREAFTPF 335
            ||||..:.|         :.||......|.|        :::.:|:|.||.:...:.|::.|:.|
Human    56 TEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120

  Fly   336 GEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPASKENIK 400
            ||:.||.:..||.|.:|:|:|||.| |:||:...:.......|..:.|....|  |...:||.:|
Human   121 GEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMDQKEHKLNGKVIDPKRA--KAMKTKEPVK 182

  Fly   401 PLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEI------RVFKDKGYAFV 459
                            .::|||::   ....||.:::.|..:|.::.|      :..|.:|:.|:
Human   183 ----------------KIFVGGLS---PDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 228

  Fly   460 RFSTKEAATHAI-VGVHNTEINAQPVKCSWGKESGDPNNAQTIATQALNSAAAAAAGFPYGVGAA 523
            .|..:|.....: ...||..::...:|.:..||......                   .:|....
Human   229 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ-------------------QWGSRGG 274

  Fly   524 AAAAAYGQQLAATGCW---YSPTPTYPASSATAAAVTPAAASAAAVQNQFLQGIQGYHFGQYGGY 585
            .|..|.|:....:..|   ||                          |.:.||     :|.||..
Human   275 FAGRARGRGGGPSQNWNQGYS--------------------------NYWNQG-----YGNYGYN 308

  Fly   586 QQGYMGMG 593
            .|||.|.|
Human   309 SQGYGGYG 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trvNP_001163754.3 RRM2_TIA1_like 313..387 CDD:409789 25/73 (34%)
RRM3_TIA1_like 416..489 CDD:409790 16/79 (20%)
HNRNPDNP_112738.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..92 9/35 (26%)
CBFNT <60..78 CDD:311868 2/17 (12%)
RRM1_hnRNPD 99..172 CDD:410150 25/73 (34%)
RRM2_hnRNPD 183..257 CDD:241027 16/76 (21%)

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