Protein Alignment trv and Tia1

DIOPT Version :9

• Sequence 1: NP_001163754.3
• Gene: trv / 43362
• FlyBaseID: FBgn0085391
• Length: 651
• Species: Drosophila melanogaster
• Sequence 2: XP_006236890.1
• Gene: Tia1 / 312510
• RGDID: 1305742
• Length: 387
• Species: Rattus norvegicus
• Alignment Length: 408
• Identity: 166/408 - (40%)
• Similarity: 207/408 - (50%)
• Gaps: 89/408 - (21%)

  Fly   237 AAAAVSAYQRNGKLPRNLPALRAMEMALRTNSFATPPAPHSLPLPPPHAARTEGGGQDMEDSDEE 301
            ||||::|  .||:        :.|...::.| :||.|:                 .|..:.|...
  Rat    60 AAAALAA--MNGR--------KIMGKEVKVN-WATTPS-----------------SQKKDTSSST 96

  Fly   302 MEYMPPLHKQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEA 366
            :.........||:||||||.||.|:.::.||.|||.|||.|||:|..|.||||||||||..|.:|
  Rat    97 VVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 161

  Fly   367 ESAITAMNGQWLGSRSIRTNWATRKPPASK----ENIKPLTFDEVYNQSSPSNCTVYVGGVNSAL 427
            |:||..|.|||||.|.||||||||||||.|    .|.|.|::|||.:||||.|||||.|||.|.|
  Rat   162 ENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGL 226

  Fly   428 TALSEEVLQKTFAPYGAIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGKES 492
            |   |:::::||:|:|.|.|||||.||||:|:|||:.|:|.||||.|:.|.|....|||.||||:
  Rat   227 T---EQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKET 288

  Fly   493 GDPNNAQTIATQALNSAAAAAAGFPYGVGAAAAAAAYGQQLAATGCWYSPTPTYPASSATAAAVT 557
            .|..|    ..|..|.     .|:|         .||||    .|.||
  Rat   289 LDMIN----PVQQQNQ-----IGYP---------PAYGQ----WGQWY----------------- 314

  Fly   558 PAAASAAAVQNQFLQGIQGYHFGQYG--GYQQGYMGMGVQIPATWQGVTQAQISPAQQLATGVAG 620
               .:|..:......|.|...:|.||  ..|||:  ...|..|.|.|...: :.|.|    |..|
  Rat   315 ---GNAQQIGQYVPNGWQVPAYGMYGQPWSQQGF--NQTQSSAPWMGPNYS-VPPPQ----GQNG 369

  Fly   621 TAIP-QAAG--VVAYPIQ 635
            ..:| |.||  |..|..|
  Rat   370 GMLPNQPAGYRVAGYETQ 387

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
trv	NP_001163754.3	RRM2_TIA1_like	313..387	CDD:240799	48/73 (66%)
		RRM3_TIA1_like	416..491	CDD:240800	43/74 (58%)
Tia1	XP_006236890.1	ELAV_HUD_SF	6..281	CDD:273741	122/251 (49%)
		RRM_SF	8..82	CDD:302621	9/32 (28%)
		RRM2_TIA1	106..185	CDD:241062	52/78 (67%)
		RRM3_TIAR	215..287	CDD:241064	43/74 (58%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	99	1.000	Domainoid score	I6881
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1066369at2759
OrthoFinder	1	1.000	-	-		FOG0000924
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR10352
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X831
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	7	7.020