Protein Alignment trv and ssx

DIOPT Version :9

• Sequence 1: NP_001163754.3
• Gene: trv / 43362
• FlyBaseID: FBgn0085391
• Length: 651
• Species: Drosophila melanogaster
• Sequence 2: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Alignment Length: 262
• Identity: 65/262 - (24%)
• Similarity: 122/262 - (46%)
• Gaps: 58/262 - (22%)

  Fly   291 GGQDMEDSDEEMEYMPPLHKQ-----------------------FHIFVGDLSSEIETQQLREAF 332
            ||...|.|.:|.::    |.|                       .::.:..|..::..::|...|
  Fly    53 GGDGQEHSGDEEQH----HSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLF 113

  Fly   333 TPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPASKE 397
            :..|.|:.|:::||.:|..|.|||||.:..:|::|.||..:||.::.::.::.::|  :|  ..:
  Fly   114 SGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYA--RP--GGQ 174

  Fly   398 NIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVFKDK------GY 456
            :||              :..:||  :|.:.. :::::|.:.|:|||.|.:..:.:||      |.
  Fly   175 SIK--------------DTNLYV--INLSRN-INDDMLDRIFSPYGLIVQRNILRDKLTGRPRGV 222

  Fly   457 AFVRFSTKEAATHAIVGVHNT--EINAQPVKCSWGKESGDPNNAQTIATQALNSAAAAAAGFPYG 519
            ||||::.:|.|..||..::||  |..:||:.....:|.|....||.:|  .:........|.|..
  Fly   223 AFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQFMA--QIGGGNGGGGGGPPH 285

  Fly   520 VG 521
            :|
  Fly   286 MG 287

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
trv	NP_001163754.3	RRM2_TIA1_like	313..387	CDD:240799	21/73 (29%)
		RRM3_TIA1_like	416..491	CDD:240800	25/82 (30%)
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	23/83 (28%)
		RRM_SF	179..257	CDD:302621	25/80 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910