Protein Alignment trv and Hnrnpdl

DIOPT Version :9

• Sequence 1: NP_001163754.3
• Gene: trv / 43362
• FlyBaseID: FBgn0085391
• Length: 651
• Species: Drosophila melanogaster
• Sequence 2: XP_006250724.1
• Gene: Hnrnpdl / 305178
• RGDID: 1309950
• Length: 419
• Species: Rattus norvegicus
• Alignment Length: 478
• Identity: 105/478 - (21%)
• Similarity: 158/478 - (33%)
• Gaps: 161/478 - (33%)

  Fly   184 PPMLTHFQAMMQPPPLPPS--------------PMMPPQSFGCPLPSRTPATPPLPGTYRVQ--- 231
            ||.|:|.     ||||.||              |..|.|.  .||.....::....|..|.|
  Rat     4 PPRLSHV-----PPPLFPSAPATLASRSLSHWRPRAPRQL--APLLPSLASSSSRQGARRTQRHV 61

  Fly   232 SLKSAAAAAVSAYQRNGKLPRNLPAL--RAMEMALRTNSFATPPAPHSLPLPPPHAARTEGGGQD 294
            :.:..:..|..|..:.|:  |..|.|  |..:.:....|.|..|...:....|     ...|...
  Rat    62 TAQQPSRLAGGAAIKGGR--RRRPDLFRRHFKSSSIQRSAAAAPGTRTARQHP-----LADGSAT 119

  Fly   295 MEDSDEEMEYMPPLHKQF----------------HIFVGDLSSEIETQQLREAFTPFGEISDCRV 343
            |||.:|....     ::|                .:|:|.||.:...:.|.|..:.|||:.||.:
  Rat   120 MEDMNEYSNI-----EEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTI 179

  Fly   344 VRDPQTLKSKGYGFVSFIKKSEAESAIT----AMNGQWLGSRSIRTNWATRKPPASKENIKPLTF 404
            ..||.|.:|:|:|||.|...:..:..:.    .::|:.:..:  |......|.|..|
  Rat   180 KTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPK--RAKALKGKEPPKK-------- 234

  Fly   405 DEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVFKD------KGYAFVRFST 463
                         |:|||::   ...|||.:::.|..:|.|:.|.:..|      :|:.|:.::.
  Rat   235 -------------VFVGGLS---PDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTD 283

  Fly   464 KEAATHAI------VGVHNTEIN-AQPVKCSWGKESGDPNNAQTIATQALNSAAAAAAGFPYGVG 521
            :|.....:      :|....||. |||      ||.......|   .:....|||...|     |
  Rat   284 EEPVKKLLESRYHQIGSGKCEIKVAQP------KEVYRQQQQQ---QKGGRGAAAGGRG-----G 334

  Fly   522 AAAAAAAYGQQLAATGCWYSPTPTYPASSATAAAVTPAAASAAAVQNQFLQG------------- 573
            |.......||.      |..                       ...|.:.||
  Rat   335 ARGRGRGQGQN------WNQ-----------------------GFNNYYDQGYGNYNSAYGDESY 370

  Fly   574 -------IQGYHFGQYGGYQQGY 589
                   ..||::|.| ||.|||
  Rat   371 SGYGGYDYTGYNYGSY-GYGQGY 392

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
trv	NP_001163754.3	RRM2_TIA1_like	313..387	CDD:240799	22/77 (29%)
		RRM3_TIA1_like	416..491	CDD:240800	21/87 (24%)
Hnrnpdl	XP_006250724.1	RRM1_hnRPDL	149..224	CDD:410152	22/76 (29%)
		RRM2_hnRPDL	234..308	CDD:409998	19/97 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910