DRSC/TRiP Functional Genomics Resources

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Protein Alignment trv and cwf2

DIOPT Version :10

Sequence 1:NP_001163754.3 Gene:trv / 43362 FlyBaseID:FBgn0085391 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_593337.1 Gene:cwf2 / 2542531 PomBaseID:SPAC3A12.11C Length:388 Species:Schizosaccharomyces pombe


Alignment Length:107 Identity:35/107 - (32%)
Similarity:50/107 - (46%) Gaps:18/107 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   415 NCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVFKDKGYAFVRF-------STKEAATHAIV 472
            |.|:||||:..  |...||::.:.||.:|.|:.|||...:|.||:.:       ..|||..|..:
pombe   173 NYTLYVGGITP--TDDIEEIVSRHFAEWGDIERIRVLNSRGIAFITYLNEANAQFAKEAMAHQSL 235

  Fly   473 GVHNTEINAQPVKCSWGKESGDPNNAQTIATQ-ALNSAAAAA 513
            . |:..:|.:     |.  :.|||.|.....| .|...||.|
pombe   236 D-HDECLNVR-----WA--TTDPNPASQARNQRRLEERAANA 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trvNP_001163754.3 RRM2_TIA1_like 313..387 CDD:409789
RRM3_TIA1_like 416..489 CDD:409790 24/79 (30%)
cwf2NP_593337.1 Torus 49..153 CDD:435160
RRM_cwf2 173..247 CDD:409795 26/83 (31%)
Blue background indicates that the domain is not in the aligned region.

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