DRSC/TRiP Functional Genomics Resources

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Protein Alignment trv and Hnrnpd

DIOPT Version :10

Sequence 1:NP_001163754.3 Gene:trv / 43362 FlyBaseID:FBgn0085391 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_001070733.1 Gene:Hnrnpd / 11991 MGIID:101947 Length:355 Species:Mus musculus


Alignment Length:336 Identity:76/336 - (22%)
Similarity:124/336 - (36%) Gaps:99/336 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   285 AARTEGGGQDME---------DSDEEMEYMPPLH--------KQFHIFVGDLSSEIETQQLREAF 332
            |..||||..:.|         :.||......|.|        :::.:|:|.||.:...:.|::.|
Mouse    53 AGGTEGGSAEAEGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYF 117

  Fly   333 TPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPASKE 397
            :.|||:.||.:..||.|.:|:|:|||.| |:||:...:.......|..:.|....|  |...:||
Mouse   118 SKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMDQKEHKLNGKVIDPKRA--KAMKTKE 179

  Fly   398 NIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEI------RVFKDKGY 456
            .:|                .::|||::   ....||.:::.|..:|.::.|      :..|.:|:
Mouse   180 PVK----------------KIFVGGLS---PDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 225

  Fly   457 AFVRFSTKEAATHAI-VGVHNTEINAQPVKCSWGKESGDPNNAQTIATQALNSAAAAAAGFPYGV 520
            .|:.|..:|.....: ...||..::...:|.:..||......                   .:|.
Mouse   226 CFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ-------------------QWGS 271

  Fly   521 GAAAAAAAYGQQLAATGCW---YSPTPTYPASSATAAAVTPAAASAAAVQNQFLQGIQGYHFGQY 582
            ....|..|.|:....:..|   ||                          |.:.||     :|.|
Mouse   272 RGGFAGRARGRGGGPSQNWNQGYS--------------------------NYWNQG-----YGNY 305

  Fly   583 GGYQQGYMGMG 593
            |...|||.|.|
Mouse   306 GYNSQGYGGYG 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trvNP_001163754.3 RRM2_TIA1_like 313..387 CDD:409789 25/73 (34%)
RRM3_TIA1_like 416..489 CDD:409790 16/79 (20%)
HnrnpdNP_001070733.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..91 10/37 (27%)
CBFNT <60..78 CDD:311868 2/17 (12%)
RRM1_hnRNPD 99..172 CDD:410150 25/73 (34%)
RRM2_hnRNPD 183..257 CDD:241027 16/76 (21%)

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