DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment betaTub97EF and tube1

DIOPT Version :9

Sequence 1:NP_001163753.1 Gene:betaTub97EF / 43359 FlyBaseID:FBgn0003890 Length:457 Species:Drosophila melanogaster
Sequence 2:NP_001016136.1 Gene:tube1 / 100488997 XenbaseID:XB-GENE-492734 Length:472 Species:Xenopus tropicalis


Alignment Length:457 Identity:145/457 - (31%)
Similarity:236/457 - (51%) Gaps:36/457 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MREIVHLQAGQCGNQIGSKFWEIISDEH-GIDPNGYYHGESALQHERIDVYYN----EASSGKYV 60
            |.:.:.:|.||||||||.:||::...|| .::..|.:..........:|....    :|..||..
 Frog     1 MTQSIVVQVGQCGNQIGCRFWDLALREHASVNKKGIFDEALCSFFRNVDTRAEAGGADAQRGKIC 65

  Fly    61 ---PRAVLIDLEPGTMDSVRQSPVGQLFRPDNFVYGQSGAGNNWAKGHYTEGAELIDSVLEVLRK 122
               .||||||:|.|.::.:.|.|:..||.....:...||:|||||.||...|.:..:.::|.||:
 Frog    66 SLKARAVLIDMEEGVVNEILQGPLRDLFDSKQLITDVSGSGNNWAVGHKLYGGQYREHIVENLRR 130

  Fly   123 ESEGCDCLQGFQLAHSLGGGTGSGLGTLLISKIREEYPDRIMNSFSVVPSPKVSDTVVEPYNATL 187
            .:|.|||||.|.:.||:||||||||||.:::.:.||:|:......||.||.: .|.:..|||:.|
 Frog   131 TAEQCDCLQCFFVIHSMGGGTGSGLGTFVLNVLEEEFPEVYRFVTSVYPSAE-DDVITSPYNSVL 194

  Fly   188 SIHQLVENTDETFCIDNEALYDICFRT------------------------LKLSSPTYGDLNHL 228
            ::.:|.|:.|....|:|:||.||..:.                        :|.:...:..:|::
 Frog   195 AMKELTEHADCVLPIENQALVDIVNKINQMANTGKLGNVKSNSLLTSNKGGIKENEKPFDAMNNI 259

  Fly   229 VSVTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAKGSQQYRALTVAELTQQM 293
            |:..:..:|:..||.|.||.||.::::|:||||:||:......||............:.::....
 Frog   260 VANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLTSSLTPLYTLADVNVPTRRLDQMFSDA 324

  Fly   294 FDAKNMMTACDPRHGRYLTVACIFRGPMSMKEVDTQMYNVQSKNSSYFVEWIPNNVKVAVCDIPP 358
            |...:.:...||:|..||..|.:.||.:.:.::...:..:  |....||.|.....|..:|.:||
 Frog   325 FSKDHQLIRADPKHSLYLACALMVRGNVQISDLRRNIERL--KPFLQFVSWNQEGWKTGLCSVPP 387

  Fly   359 RGLKMSATFIGNSTAIQEIFKRISEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLISEY 422
            .|...|...:.|:|.::..|..:.::|:.::|:||.||.|.. :||::..||||.|:::.||.||
 Frog   388 VGHSHSLLALANNTCVKPTFIELRDRFSKLYRKKAHLHHYMQVDGMEQHCFTEAISSLSSLIEEY 452

  Fly   423 QQ 424
            .|
 Frog   453 SQ 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaTub97EFNP_001163753.1 PLN00220 1..444 CDD:215107 145/457 (32%)
beta_tubulin 2..426 CDD:276956 144/456 (32%)
tube1NP_001016136.1 PTZ00387 1..456 CDD:240395 145/457 (32%)
epsilon_tubulin 2..455 CDD:276959 144/456 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.