DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4849 and CG2017

DIOPT Version :9

Sequence 1:NP_651605.1 Gene:CG4849 / 43358 FlyBaseID:FBgn0039566 Length:975 Species:Drosophila melanogaster
Sequence 2:NP_649603.3 Gene:CG2017 / 40733 FlyBaseID:FBgn0037391 Length:643 Species:Drosophila melanogaster


Alignment Length:187 Identity:40/187 - (21%)
Similarity:65/187 - (34%) Gaps:46/187 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 VALVGHLHHGKTTFVDCLI---------RQTHPQFETMEERQLRYTDTLFTEQERGCSIKATPVT 189
            ||::|....||:|.:..|.         |.....|..|.|.|...|..: :.:..|.......|.
  Fly   218 VAVLGGADAGKSTLLGVLTQDELDNGHGRARLNMFRHMHEIQSGRTSCI-SHETLGFDALGNVVN 281

  Fly   190 ------LVLQDVKQK-SYLLNIFDTPGHVNFSDEATAAMRMSDG-----VVLFIDAAEGVMLNTE 242
                  :..:::..: |.|:...|..||..:......|:   .|     .:|.:.|..|....||
  Fly   282 YKYNEMMTAEEISDRSSKLVTFMDLAGHRRYMRTTVQAL---SGYSPHYAMLVVSAGSGCNDTTE 343

  Fly   243 RLLKHAVQERQAITVCINKIDR----LILELKLPPQDAYFKLKHIVEEVNGLLSTYG 295
                    |..||   :..:|.    |:.:..:...||      .|:|:..||:|.|
  Fly   344 --------EHLAI---VRALDMPFFVLVTKTDITSPDA------TVQELCNLLTTIG 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4849NP_651605.1 EFTUD2 4..111 CDD:292623
PTZ00416 115..957 CDD:240409 40/187 (21%)
Snu114p 132..340 CDD:206730 40/187 (21%)
Translation_Factor_II_like 477..568 CDD:295476
snRNP_III 589..660 CDD:293921
EF2_IV_snRNP 660..837 CDD:238840
eEF2_C_snRNP 832..911 CDD:239765
CG2017NP_649603.3 GTPBP1 100..635 CDD:227583 40/187 (21%)
GTPBP1_like 217..436 CDD:206728 40/187 (21%)
GTPBP_II 450..536 CDD:293895
GTPBP_III 547..634 CDD:294007
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464562
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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