DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4849 and Efl1

DIOPT Version :9

Sequence 1:NP_651605.1 Gene:CG4849 / 43358 FlyBaseID:FBgn0039566 Length:975 Species:Drosophila melanogaster
Sequence 2:NP_001101004.1 Gene:Efl1 / 308789 RGDID:1306521 Length:1127 Species:Rattus norvegicus


Alignment Length:1116 Identity:274/1116 - (24%)
Similarity:458/1116 - (41%) Gaps:301/1116 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 MEFMADLMDTPPLIRNVALVGHLHHGKTTFVDCLIRQTHPQFETMEERQLRYTDTLFTEQERGCS 182
            ::.|..|......|||:.::.|:.|||||..|||| .::....:....:|||.|:...||.||.:
  Rat     6 LDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLI-SSNGIISSRLAGKLRYMDSREDEQVRGIT 69

  Fly   183 IKATPVTLVLQDVKQKSYLLNIFDTPGHVNFSDEATAAMRMSDGVVLFIDAAEGVMLNTERLLKH 247
            :|::.::|...:..:: ||:|:.|:||||:||.|.:.|:|:.||.::.:||.|||...|:.:|:.
  Rat    70 MKSSAISLHYAEGSEE-YLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQ 133

  Fly   248 AVQERQAITVCINKIDRLILELKLPPQDAYFKLKHIVEEVNGLLSTY------------------ 294
            |..|.....:.||||||||:|||..||:||..||:|:.::|.|..|.                  
  Rat   134 AWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILGQINALTGTLFTSKVLEERAERETESQA 198

  Fly   295 ------------------GAPDDNLLVSPILGNVCFASSLYGFCFTLKSFAKLYADTYEGVAYLD 341
                              ...|..|..||..|||.|.|::.|:.|.::.||::|:... |:....
  Rat   199 KSHSEQGDQVYDWSTGLEDVDDSQLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKI-GIKKEV 262

  Fly   342 FAKRLWGDMYFNSKTRKFSKKQPHNSAQRSFVEFILEPMYKLIAQVVGDVDTTLSDTLAELNVRV 406
            ..|.||||.|.|.|.:|..|.......:..||:.|||.::.|...|:......:...:..|.:::
  Rat   263 LLKTLWGDYYINMKAKKIMKVDQAKGKKPLFVQLILENIWSLYDAVLKKDKEKVDKIVTSLGLKI 327

  Fly   407 -SKEEMKSNIRPLLRLVCNRFMGDCSGFVDMCVEHIKSPLENAKRKVDHIY-TG-------PKEG 462
             ::|...|:.:..:..:|::::......:.|..:.:.|||:....:|:.:. ||       |.|.
  Rat   328 GAREARHSDPKVQINAICSQWLPISHAVLAMVCQKLPSPLDMTSERVEKLMCTGSQTFESLPLET 392

  Fly   463 DIYR-DMISCNQYGT--LMVHSSKMYPND------------------------------------ 488
            ...: ..:.|....|  :::..|||:..|                                    
  Rat   393 QALKAAFMKCGSEDTAPVIIFVSKMFAVDVKALPQNKPRPLTQEEMAQRRERARQRHAEKLAAAQ 457

  Fly   489 ----------------------------DCT---------------FFQVLARIVSGTLHAGQEV 510
                                        |.|               .|...||:.||....|:::
  Rat   458 GQAPQGPTQDGGALETSPQEDEPRGEEPDMTSVSRQPAPQEESSQEAFIAFARVFSGVARRGKKI 522

  Fly   511 RVLGENYTLQDEEDSRILQ-----------------------VGRLWVFESRYKVELNRVPAGNW 552
            .|||..|:..|     .||                       :..|::...|...:|..||.||.
  Rat   523 FVLGPKYSPVD-----FLQRVPQGFSAPLEDLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNV 582

  Fly   553 VLIEGIDQCIVKTSTIVDI-NVPEDLYIFRPLKFNTQSIIKIAVEPVNPSELPKMLDGLRKVNKS 616
            :.|.|:...::|::|:..: :.|.    |.||.|....|:::||||.:|||:|:::.|::.:|::
  Rat   583 LGIGGLQDSVLKSATLCSLPSCPP----FIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQA 643

  Fly   617 YPLLSTRVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAET 681
            .|.:...::|:||||::..||::|...:.|||:.:::|.|.|::|::.|.||:.:...:....|.
  Rat   644 DPCVQILIQETGEHVLVTAGEVHLQRCLDDLRERFAKIHISVSEPIIPFRETITKPPKVDMVNEE 708

  Fly   682 PNKKNKITMISEPLE------KGLAEDIENGTVCINWNKK-------------RIGEFFQVNYD- 726
            ..::.|:.:|.:..|      :|:..| .:|.:.|....|             .:....:.|.| 
  Rat   709 IGRQQKVAVIHQTKEEQSKIPEGILVD-SDGLITIPTPNKLATLSVRAIPLPEEVTRILEENSDL 772

  Fly   727 ----------------------------WDL-------LAAR-------SIWAFGPDSTGPNILV 749
                                        |:.       |..|       .||:|||...||||||
  Rat   773 IRSMELLTSSLNEGRNTQAIHQKTQEKIWEFKGKLEKHLTGRKWRNTVDQIWSFGPRKCGPNILV 837

  Fly   750 DDTL---------PSEVDKNLLTAVKD---SIVQGFQWGTREGPLCEEPIRNVKFKILDGVIANE 802
            ..:.         |:..:....:..:|   |||.|||..|..||:||||:..|.| :|:....|:
  Rat   838 SRSEDFQSSVWSGPAGRESKEASRFRDFGNSIVSGFQLATLSGPMCEEPLMGVCF-VLEKWELNK 901

  Fly   803 ALHRG----------------------------------------------------------GG 809
            ....|                                                          .|
  Rat   902 CAEPGASDKQSQGQCDLTGEGQEKSKTCPVGDENQEQQDGYSEPFEETSQKGDSPVIDCYGPFSG 966

  Fly   810 QIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLARRRGHVTQDAPVSGSPIYTI 874
            |:|.|.:.....|..:...|||......::.|.:|.:..||.||::|.|.|.|:....|:.::.|
  Rat   967 QLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFII 1031

  Fly   875 KAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPL----DKSIIIRPLEPQQASHLARE 935
            ||.:|..:||||..::|..|.|.|....||.||:::|.||.    .:...:...|...:.:.||:
  Rat  1032 KAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARK 1096

  Fly   936 FMIKTRRRKGL 946
            :|...|:||||
  Rat  1097 YMNAVRKRKGL 1107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4849NP_651605.1 EFTUD2 4..111 CDD:292623
PTZ00416 115..957 CDD:240409 274/1116 (25%)
Snu114p 132..340 CDD:206730 82/243 (34%)
Translation_Factor_II_like 477..568 CDD:295476 29/192 (15%)
snRNP_III 589..660 CDD:293921 26/70 (37%)
EF2_IV_snRNP 660..837 CDD:238840 57/308 (19%)
eEF2_C_snRNP 832..911 CDD:239765 27/78 (35%)
Efl1NP_001101004.1 PTZ00416 1..1110 CDD:240409 274/1116 (25%)
EF2 20..253 CDD:206672 80/234 (34%)
EF2_II 505..600 CDD:293913 24/99 (24%)
EF2_snRNP_III 616..687 CDD:293918 26/70 (37%)
aeEF2_snRNP_like_IV 687..993 CDD:238839 57/307 (19%)
eEF2_snRNP_like_C 990..1068 CDD:239763 27/77 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0480
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D140796at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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