DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4849 and Gfm1

DIOPT Version :9

Sequence 1:NP_651605.1 Gene:CG4849 / 43358 FlyBaseID:FBgn0039566 Length:975 Species:Drosophila melanogaster
Sequence 2:NP_613057.2 Gene:Gfm1 / 28030 MGIID:107339 Length:751 Species:Mus musculus


Alignment Length:877 Identity:190/877 - (21%)
Similarity:320/877 - (36%) Gaps:230/877 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 IRNVALVGHLHHGKTTFVDCLIRQTHPQFETMEERQLR-----YTDTLFTEQERGCSIKATPVTL 190
            |||:.:..|:..||||..:.::..| .:..||.|.:.:     ..|::..|::||.:|::.....
Mouse    47 IRNIGISAHIDSGKTTLTERVLYYT-GRIATMHEVKGKDGVGAVMDSMELERQRGITIQSAATYT 110

  Fly   191 VLQDVKQKSYLLNIFDTPGHVNFSDEATAAMRMSDGVVLFIDAAEGVMLNTERLLKHAVQERQAI 255
            :.:|:.     :||.||||||:|:.|...|:|:.||.||.:.|..||...|..:.:...:.....
Mouse   111 MWKDIN-----INIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMTVSRQMKRYNVPF 170

  Fly   256 TVCINKIDRLILELKLPPQDAYFKLKHIVEEVNGLLSTYGAPDDNLLVSPILGNVCFASSLYGFC 320
            ...|||:||:........|....||.|                          |..|.....|  
Mouse   171 LTFINKLDRMGSNPSRALQQMRSKLNH--------------------------NAAFVQIPIG-- 207

  Fly   321 FTLKSFAKLYADTYEGVAYLDFAKRLWGDMYFNSKTRKFSKKQPHNSAQRSFVEFILEPMYKLIA 385
                    |..| ::|:..|...:.::.|..|....|.........:|.....:.::|       
Mouse   208 --------LEGD-FKGIIDLIEERAIYFDGDFGQIVRYDEIPAGLRAAAADHRQELIE------- 256

  Fly   386 QVVGDVDTTLSDTLAELNVRVSKEEMKSNIR--PLLRLVCNRFMGDC------SGFVDMCVEHIK 442
             .|.:.|..|.:...|..: .|..::|..||  .|.|.....|:|..      ...:|..:|::.
Mouse   257 -CVANSDEQLGELFLEEKI-PSVSDLKRAIRRATLSRSFTPVFLGSALKNKGVQPLLDAVLEYLP 319

  Fly   443 SPLE---------NAKRKVDHIYTGPKEGDIYRDM-----ISCNQYGTLMVHSSKMYPNDDCTFF 493
            :|.|         |..::...|...|:..|.:..:     :...::|.|                
Mouse   320 NPSEVQNYAILNQNDSKEKTKILMNPQRDDSHPFVGLAFKLEAGRFGQL---------------- 368

  Fly   494 QVLARIVSGTLHAGQEVRVLGENYTLQDEEDSRILQVGRLWVFESRYKVELNRVPAGNWVLIEGI 558
             ...|...|.|..|.         |:.:....:.::|.||....:....::..|.||:...:.||
Mouse   369 -TYVRNYQGELKKGS---------TIYNTRTGKKVRVQRLVRMHADMMEDVEEVYAGDICALFGI 423

  Fly   559 DQCIVKTSTIVD--------INVPEDLYIFRPLKFNTQSIIKIAVEPVNPSELPKMLDGLRKVNK 615
            |.....|.|..|        |:|||             .:|.||:.|.|.::|.|...|:.:..:
Mouse   424 DCASGDTFTNKDNSDLSMESIHVPE-------------PVISIAMRPSNKNDLEKFSKGIGRFTR 475

  Fly   616 SYPLLSTRVE-ESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFA 679
            ..|......: ||.|.::.|.|||:|:.....:.:.|. .......|.|||.||:|        |
Mouse   476 EDPTFKVHFDPESKETIVSGMGELHLEIYAQRMEREYG-CPCITGKPKVAFRETIV--------A 531

  Fly   680 ETP----NKK--------NKITMISEPLEKGLAEDIENGTVCINWNKKRIGEFFQVNYDWDLLAA 732
            ..|    :||        .|:..:.|||.   .||                 :.::.:.      
Mouse   532 PVPFDFTHKKQSGGAGQFGKVIGVLEPLP---PED-----------------YTKLEFS------ 570

  Fly   733 RSIWAFGPDSTGPNILVDDTLPSEVDKNLLTAVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDG 797
                             |:|..|.|.|..:.||:    :||.....:|||....:..::|.:.||
Mouse   571 -----------------DETFGSNVPKQFVPAVE----KGFLDACEKGPLSGHKLSGLRFVLQDG 614

  Fly   798 ----VIANEA--LHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLARR 856
                |.:||.  :..|.|.:        ..|....|..::||.:.|||.||.:....|:..:.||
Mouse   615 AHHMVDSNEISFIRAGEGAL--------KQALANGTLCIIEPIMSVEVIAPNEFQGTVFAGINRR 671

  Fly   857 RGHVT-QDAPVSGSPIYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSII 920
            .|.:| ||..   ...:|:.|.:|..:.||:.|:||:.|:|:......:..:|            
Mouse   672 HGVITGQDGI---EDYFTLYADVPLNNMFGYSTELRSCTEGKGEYTMEYCRYQ------------ 721

  Fly   921 IRPLEPQQASHLAREFMIKTRR---RKGLSED 949
              |..|.....|..:::..|.:   :||.:::
Mouse   722 --PCSPSTQEELINKYLEATGQLPVKKGKAKN 751

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4849NP_651605.1 EFTUD2 4..111 CDD:292623
PTZ00416 115..957 CDD:240409 190/877 (22%)
Snu114p 132..340 CDD:206730 52/212 (25%)
Translation_Factor_II_like 477..568 CDD:295476 16/90 (18%)
snRNP_III 589..660 CDD:293921 18/71 (25%)
EF2_IV_snRNP 660..837 CDD:238840 41/194 (21%)
eEF2_C_snRNP 832..911 CDD:239765 25/79 (32%)
Gfm1NP_613057.2 EF-G 49..321 CDD:206673 71/323 (22%)
PRK12740 53..732 CDD:237186 183/850 (22%)
mtEFG1_II_like 353..432 CDD:293908 17/104 (16%)
EFG_III 447..522 CDD:293919 20/88 (23%)
EFG_mtEFG1_IV 525..641 CDD:238715 35/178 (20%)
mtEFG1_C 647..724 CDD:239764 26/93 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0480
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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