DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4849 and gfm-1

DIOPT Version :9

Sequence 1:NP_651605.1 Gene:CG4849 / 43358 FlyBaseID:FBgn0039566 Length:975 Species:Drosophila melanogaster
Sequence 2:NP_496787.1 Gene:gfm-1 / 174956 WormBaseID:WBGene00009246 Length:750 Species:Caenorhabditis elegans


Alignment Length:805 Identity:176/805 - (21%)
Similarity:301/805 - (37%) Gaps:179/805 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 IRNVALVGHLHHGKTTFVDCLIRQTHPQFETMEERQLR-----YTDTLFTEQERGCSIKATPVTL 190
            |||:.:..|:..||||..:.::... .:.::|.|.:.:     ..|.:..|::||.:|::.    
 Worm    44 IRNIGISAHIDSGKTTVTERILYYA-GRIDSMHEVRGKDDVGATMDFMDLERQRGITIQSA---- 103

  Fly   191 VLQDVKQKSYL------LNIFDTPGHVNFSDEATAAMRMSDGVVLFIDAAEGVMLNTERLLKHAV 249
                   .:|:      :||.||||||:|:.|...|:|:.||.||.:....||...|..:.:...
 Worm   104 -------ATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQLA 161

  Fly   250 QERQAITVCINKIDRLILELKLPPQDAYFKLKHIVEEVNGLLSTYGAPDDNL--LVSPILGNVCF 312
            :........:||:||    ....|..|...|::.:.....|:......|.|.  :|..:.|:..:
 Worm   162 RYNVPFICFVNKMDR----NGATPLKALDGLRNKLNHNAALIHLPIGKDSNFNGIVDLVEGHALY 222

  Fly   313 ASSLYGFCFTLKSFAK--------LYADTYEGVAYLDFAKRLWGDMYFNSKTRKFSKKQPHNSAQ 369
            .....|.........|        ...:..|.:|.:|   ...|:|:.|.:|.  :.:|.|.:.:
 Worm   223 YEGEGGLIVRKDEIPKDLRVEAEDRRQELIEHIANVD---ETLGEMFLNDQTP--NVQQIHEAIR 282

  Fly   370 RSFVEFILEPMY-------KLIAQVVGDVDTTLSDTLAELNVRVSKEEMKSNIRPLLRLVCNRFM 427
            |:.|:....|:.       |.:..::..|...|.|....:|....|.|.               .
 Worm   283 RTVVKRAFVPVLSGSALKNKGVQTMINSVVKYLPDPSEVVNRATVKTET---------------T 332

  Fly   428 GDCSGFVDMCVEHIKSPLENAKRKVDHIYTGPKEGDIYRDMISCNQYGTLMVHSSKMYPNDDCTF 492
            ||..|.       |.||    ||..|..:.|      ....:...:||.|             |:
 Worm   333 GDEKGI-------ILSP----KRNNDKPFVG------LAFKLEAGKYGQL-------------TY 367

  Fly   493 FQVLARIVSGTLHAGQEVRVLGENYTLQDEEDSRILQVGRLWVFESRYKVELNRVPAGNWVLIEG 557
            |    |:..|.|..|.         |:....|.|.::|.||....:....|:....||:.....|
 Worm   368 F----RVYQGQLSKGD---------TVYASRDGRKVRVQRLVRMHAADMEEITTAYAGDICATFG 419

  Fly   558 IDQCIVKTSTIVDINVP---EDLYIFRPLKFNTQSIIKIAVEPVNPSELPKMLDGLRKVNKSYPL 619
            :| |....:...|.|:.   |.::|..|       :|.:|::|||..:....:..|.:..|..|.
 Worm   420 LD-CHSGETFSTDQNLAPHCESMHIPEP-------VISMAIKPVNRKDADNFIKALTRFTKEDPT 476

  Fly   620 LSTRV-EESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPN 683
            ..... :|:.|.::.|.|||:|:.....::..|: ..:::..|.||:.|         |      
 Worm   477 FRREYNQEAKETIVSGMGELHLEIYAQRMKSEYN-CPVELGKPTVAYRE---------C------ 525

  Fly   684 KKNKITMISEPLEKGLAEDIENGTVCINWNKKRIGEFFQVNYDWDLLAARSIWAFGPDSTGPNIL 748
                   :..|.:.......:.|..         |:|.::.           ....|..:..|.:
 Worm   526 -------LGSPYKFHFRHKKQTGGQ---------GQFGEIE-----------GVIDPLPSDRNTV 563

  Fly   749 V---DDTLPSEVDKNLLTAVK---DSIVQGFQWGTREGPLCEEPIRNVKFKILDGVIANEALHRG 807
            |   |:|..:.:.|||..|:|   |:||       .||||.:..|..:..:|.||  :..|:...
 Worm   564 VEFSDETFGNNIPKNLFPALKKGLDAIV-------AEGPLIKSRIAGIHVRIQDG--STHAVDST 619

  Fly   808 GGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLARRRGHVTQDAPVSGSPIY 872
            ...:|.|.:.:...:|..|...|:||.:.||...|.:....|.|.|.:|...:|......|  ..
 Worm   620 EIAMINTMQNMMRESFEKANWLLLEPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEG--YA 682

  Fly   873 TIKAFIPAIDSFGFETDLRTHTQGQ 897
            |:....|..|.||:.::||:.|:|:
 Worm   683 TVICEAPLSDMFGYTSELRSLTEGK 707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4849NP_651605.1 EFTUD2 4..111 CDD:292623
PTZ00416 115..957 CDD:240409 176/805 (22%)
Snu114p 132..340 CDD:206730 50/228 (22%)
Translation_Factor_II_like 477..568 CDD:295476 19/90 (21%)
snRNP_III 589..660 CDD:293921 16/71 (23%)
EF2_IV_snRNP 660..837 CDD:238840 38/182 (21%)
eEF2_C_snRNP 832..911 CDD:239765 20/66 (30%)
gfm-1NP_496787.1 EF-G 46..318 CDD:206673 62/292 (21%)
PRK12740 50..730 CDD:237186 173/799 (22%)
mtEFG1_II_like 350..430 CDD:293908 22/112 (20%)
EFG_III 444..518 CDD:293919 17/81 (21%)
EFG_mtEFG1_IV 522..639 CDD:238715 31/167 (19%)
mtEFG1_C 644..721 CDD:239764 20/66 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0480
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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