DRSC/TRiP Functional Genomics Resources

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Protein Alignment mfrn and SAMC1

DIOPT Version :10

Sequence 1:NP_651600.1 Gene:mfrn / 43353 FlyBaseID:FBgn0039561 Length:379 Species:Drosophila melanogaster
Sequence 2:NP_568060.1 Gene:SAMC1 / 830101 AraportID:AT4G39460 Length:325 Species:Arabidopsis thaliana


Alignment Length:252 Identity:88/252 - (34%)
Similarity:125/252 - (49%) Gaps:27/252 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 AGAIAGVLEHVVMYPLDSVKTRMQSLSPPTKNMNIVSTLRTMITREGLLRPIRGASAVVLGAGPA 84
            ||..|||:....:||:|::|||:|:.....|           |..:||...:.|..|.||   ||
plant    60 AGGTAGVVVETALYPIDTIKTRLQAARGGGK-----------IVLKGLYSGLAGNIAGVL---PA 110

  Fly    85 HSLYFAAYEMTKELTAK-----FTSVRNLNYVISGAVATLIHDAISSPTDVIKQRMQMYNSPYTS 144
            .:|:...||.||:...|     .::|.:|.   :||:..|....|..||:|:|||||  ...:||
plant   111 SALFVGVYEPTKQKLLKTFPDHLSAVAHLT---AGAIGGLAASLIRVPTEVVKQRMQ--TGQFTS 170

  Fly   145 VVSCVRDIYKREGFKAFYRAYGTQLVMNLPYQTIHFTTYE--FFQNKMNLERKYNPPVHMAAGAA 207
            ..|.||.|..:|||:..|..|.:.|:.:||:..|.|..||  ....|....|:.:.|.:...||.
plant   171 APSAVRMIASKEGFRGLYAGYRSFLLRDLPFDAIQFCIYEQLCLGYKKAARRELSDPENALIGAF 235

  Fly   208 AGACAAAVTTPLDVIKTLLNTQETGLT-RGMIEASRKIYHMAGPLGFFRGTTARVLY 263
            |||...|||||||||||.|..|.:... :|:::..:.|....|.....:|...|||:
plant   236 AGALTGAVTTPLDVIKTRLMVQGSAKQYQGIVDCVQTIVREEGAPALLKGIGPRVLW 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mfrnNP_651600.1 PTZ00168 17..280 CDD:185494 88/252 (35%)
SAMC1NP_568060.1 PTZ00168 55..304 CDD:185494 88/252 (35%)

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