DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mfrn and Nars1

DIOPT Version :9

Sequence 1:NP_651600.1 Gene:mfrn / 43353 FlyBaseID:FBgn0039561 Length:379 Species:Drosophila melanogaster
Sequence 2:XP_006254906.1 Gene:Nars1 / 291556 RGDID:1307238 Length:559 Species:Rattus norvegicus


Alignment Length:43 Identity:13/43 - (30%)
Similarity:18/43 - (41%) Gaps:4/43 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 TLHSAPTSVNASGAIKTVCE----LSTRPAGPTINLHTRHTDV 369
            ||:..|....|.|..:..|:    :...|||...||....:||
  Rat   195 TLNLTPKGKQAPGGHELSCDFWELVGLAPAGGADNLINEESDV 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mfrnNP_651600.1 Mito_carr 13..98 CDD:278578
PTZ00168 17..280 CDD:185494
Mito_carr 107..190 CDD:278578
Mito_carr <215..282 CDD:278578
Nars1XP_006254906.1 AsnS 136..559 CDD:223096 13/43 (30%)
AsnRS_cyto_like_N 138..220 CDD:239818 6/24 (25%)
AsxRS_core 236..555 CDD:238399 2/2 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1056670at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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