DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NSD and ASHH1

DIOPT Version :9

Sequence 1:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster
Sequence 2:NP_001321484.1 Gene:ASHH1 / 844005 AraportID:AT1G76710 Length:519 Species:Arabidopsis thaliana


Alignment Length:228 Identity:86/228 - (37%)
Similarity:123/228 - (53%) Gaps:8/228 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly  1153 QSGNKLHPPPYVKIKTNKAVPPLRFSQNLEDLSTCNC---LPVDEHPCGPEAGCLNRMLFNECNP 1214
            |.|::|  |.|..|..|.........|..||:|.|.|   ....:..||..  |||.:...||.|
plant     9 QEGDEL--PQYEHIYQNDFSYRKHKKQKEEDISICECKFDFGDPDSACGER--CLNVITNTECTP 69

  Fly  1215 EYCKAGSLCENRMFEQRKSPRLEVVYMNERGFGLVNREPIAVGDFVIEYVGEVINHAEFQRRMEQ 1279
            .||..|..|:|:.|::.:..:.:::....||:|||..|.|..|.|::||.||||:..|.::|.:.
plant    70 GYCPCGVYCKNQKFQKCEYAKTKLIKCEGRGWGLVALEEIKAGQFIMEYCGEVISWKEAKKRAQT 134

  Fly  1280 KQRDRDENYYFLGVEKDFIIDAGPKGNLARFMNHSCEPNCETQKWTVNCIHRVGIFAIKDIPVNS 1344
            .:....::.|.:.:.....|||..||:||||:||||.|||||:||.|....||||||.:.|...:
plant   135 YETHGVKDAYIISLNASEAIDATKKGSLARFINHSCRPNCETRKWNVLGEVRVGIFAKESISPRT 199

  Fly  1345 ELTFNYLWDDLMNNSKKACFCGAKRCSGEIGGK 1377
            ||.::|.: :....:|..|.|||..|||.:|.|
plant   200 ELAYDYNF-EWYGGAKVRCLCGAVACSGFLGAK 231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NSDNP_733239.1 MSH6_like 391..508 CDD:99898
PHD2_NSD 867..932 CDD:277040
PHD3_NSD 933..988 CDD:277041
PHD4_NSD 1001..1041 CDD:277042
WHSC1_related 1047..1141 CDD:99899
AWS 1183..1233 CDD:197795 18/52 (35%)
SET 1234..1354 CDD:214614 49/119 (41%)
ASHH1NP_001321484.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001511
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22884
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.