DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NSD and AT2G18090

DIOPT Version :10

Sequence 1:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster
Sequence 2:NP_849971.1 Gene:AT2G18090 / 816321 AraportID:AT2G18090 Length:824 Species:Arabidopsis thaliana


Alignment Length:537 Identity:86/537 - (16%)
Similarity:164/537 - (30%) Gaps:205/537 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   803 ADCLERKVTGAPMPKIGSRKALVIPPTSKSPSPDEDHVTADAKEVVAVGTSLVCHECNVGEPEGC 867
            :|.|:::......|:|.::.:  .||.|:....|||                ||..|..|     
plant    47 SDSLKKRGRRGRPPRILAKAS--SPPISRKRREDED----------------VCFVCFDG----- 88

  Fly   868 VICHQVESPAVPSTPRKEDSSSHTPIEDKLLTCSQPMCGKRFHTSCCKYWPQASSSKHSARCPRH 932
                                       ..|:.|.:..|.|.:|.:|.|.......|:....|..|
plant    89 ---------------------------GSLVLCDRRGCPKAYHPACVKRTEAFFRSRSKWNCGWH 126

  Fly   933 VCHTCVSDDPSGKFQQLGSSKLAKCVRCPATYHQLSKCIPAGTQMLNTTNIICPRHNIAKADAHV 997
            :|.||..|            ....|..||  |....:|:       .::..:..|.|..      
plant   127 ICTTCQKD------------SFYMCYTCP--YSVCKRCV-------RSSEYVVVRENKG------ 164

  Fly   998 NVLWCYICVKGGELVCCETCPIAVHAHCRNIPIKTNESYICEECESGRLPLYGEIVWAKFNNFRW 1062
               :|.||:|        |..:..:|                 .|:.:     |.|...|::...
plant   165 ---FCGICMK--------TIMLIENA-----------------AEANK-----EKVQVDFDDQGS 196

  Fly  1063 WPAIILPPTEVPSNILKKAHGENDFVVRFFGTHDHGWIS-RRRVYLYIEGDTGDGHKTKSQLFRN 1126
            |                      :::.:.:      |:| :.::.|.::    |..|.|:....:
plant   197 W----------------------EYLFKIY------WVSLKEKLGLSLD----DLTKAKNPWKSS 229

  Fly  1127 YTTGVEEASRFLPIIKARRQEQDMERQSGNKLHPPPYVKIKTNKAVPPLRFSQNLEDLSTCNCLP 1191
            .:|..          |.|...:..|:..||.   |..:||:..|.       :.::.:|..|..|
plant   230 SSTAA----------KRRTTSRVHEKDDGNS---PGVMKIRRAKV-------RKMDAVSVSNLGP 274

  Fly  1192 VDEHPCGPEAGCLNRMLFNECNPEYCKAGSLCENRMFEQRKSPRLEVVYMNERGFGLVNREPIAV 1256
            ..:..|.          ..:..|:...|.:...|.:.:       .|.||......::::..:..
plant   275 SLDSNCS----------LGDRLPQLTSAATWATNELLD-------FVGYMKNGDISVLSKYDVQT 322

  Fly  1257 GDFVIEYV-----------GEVINHAEFQRRMEQKQRDRDE-----NYYFLGVEKDFIIDAGPKG 1305
              .|:|||           .|::..::..|...:::.|..|     :.:|:...:..:.| ...|
plant   323 --LVLEYVRRNNLQNSPQNSEIMCDSKLMRLFGKERVDNLEMLKLLDSHFIDQVRSPVTD-NSAG 384

  Fly  1306 NLARFMNH------SCE 1316
            .:...|::      ||:
plant   385 GVTETMSYQVNAGRSCD 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NSDNP_733239.1 PWWP_NSD_rpt1 395..514 CDD:438972
PHD2_NSD 867..932 CDD:277040 9/64 (14%)
PHD3_NSD 933..988 CDD:277041 9/54 (17%)
PHD4_NSD 1001..1041 CDD:277042 6/39 (15%)
PWWP_NSD_rpt2 1048..1143 CDD:438963 11/95 (12%)
AWS 1183..1233 CDD:197795 7/49 (14%)
SET_NSD 1233..1375 CDD:380950 17/106 (16%)
AT2G18090NP_849971.1 PHD5_NSD 81..126 CDD:277043 13/76 (17%)
SWIB-MDM2_like 295..370 CDD:349489 12/83 (14%)
GYF 457..512 CDD:214666
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.