DRSC/TRiP Functional Genomics Resources

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Protein Alignment NSD and Setmar

DIOPT Version :10

Sequence 1:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster
Sequence 2:NP_848478.2 Gene:Setmar / 74729 MGIID:1921979 Length:309 Species:Mus musculus


Alignment Length:214 Identity:70/214 - (32%)
Similarity:103/214 - (48%) Gaps:32/214 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly  1186 TCNCL----PVDEHPC----GPEAGCLNRMLFNECNPEYCKAGSLCENRMFEQRKSPRLEVVYMN 1242
            ||:||    ..|::.|    |.| |...:.:| ||| ..|:.|..|.||:.:......|:|....
Mouse    87 TCSCLRHENNYDDNLCLRDVGSE-GKYAKPVF-ECN-VLCQCGMRCRNRVVQNGLHFLLQVFQTE 148

  Fly  1243 ERGFGLVNREPIAVGDFVIEYVGEVINHAEFQRRMEQKQRDRDENY-------YFLGVEKDFIID 1300
            ::|:||...|.|..|.||.||.|||:..:|.|||: ..|...|.||       .:.|...:..:|
Mouse   149 KKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRI-HLQTSHDSNYIIAVREHIYSGQIMETFVD 212

  Fly  1301 AGPKGNLARFMNHSCEPNCETQKWTV-NCIHRVGIFAIKDIPVNSELTFNYLWDDLMNNS----- 1359
            ....||:.||:|||||||.......: :.:.::.:||.|||....||:::|....|...|     
Mouse   213 PTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDILPGEELSYDYSGRFLNQVSSKDKE 277

  Fly  1360 -------KKACFCGAKRCS 1371
                   :|.|:|||:.|:
Mouse   278 KIDCSPPRKPCYCGAQSCT 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NSDNP_733239.1 PWWP_NSD_rpt1 395..514 CDD:438972
PHD2_NSD 867..932 CDD:277040
PHD3_NSD 933..988 CDD:277041
PHD4_NSD 1001..1041 CDD:277042
PWWP_NSD_rpt2 1048..1143 CDD:438963
AWS 1183..1233 CDD:197795 18/54 (33%)
SET_NSD 1233..1375 CDD:380950 52/159 (33%)
SetmarNP_848478.2 SET_SETMAR 50..304 CDD:380942 70/214 (33%)
Blue background indicates that the domain is not in the aligned region.

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