DRSC/TRiP Functional Genomics Resources

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Protein Alignment NSD and setmar

DIOPT Version :10

Sequence 1:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster
Sequence 2:NP_001107072.2 Gene:setmar / 564575 ZFINID:ZDB-GENE-080204-61 Length:293 Species:Danio rerio


Alignment Length:232 Identity:74/232 - (31%)
Similarity:106/232 - (45%) Gaps:42/232 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  1170 KAVPPLRFSQNLEDLSTCNCLPVDEHPCGPEAGCLNRMLFNECNPEYCKAGSLCENRMFEQRKSP 1234
            ::.|.|||.|..:..:   ||  ::|   |:....:|.:| ||| .:|..|..|:.|:.:.....
Zfish    65 ESCPCLRFGQTYDSRA---CL--NQH---PQDATYSRPVF-ECN-AFCSCGESCQTRVVQNGVCV 119

  Fly  1235 RLEVVYMNERGFGLVNREPIAVGDFVIEYVGEVINHAEFQRRMEQKQRDRDENYYFL-----GVE 1294
            ||.|....:||.|:...|.:..|.||.||.||||...|.:|| :..|.....||...     |::
Zfish   120 RLGVFSTADRGLGVEALERLPCGRFVCEYAGEVIGIDEARRR-QLSQTPLHMNYIIAVQEHKGLD 183

  Fly  1295 K--DFIIDAGPKGNLARFMNHSCEPNCETQKWTVNCI-HRVGIFAIKDIPVNSELTFNYLWDDLM 1356
            :  ...:|....||:.||:||||:||.......|:.: .|:.:||.:||....||||:|  ....
Zfish   184 RVTQTFVDPVNLGNVGRFINHSCQPNLIMLPVRVHSVLPRLALFANRDIECYEELTFDY--SGGQ 246

  Fly  1357 NNS---------------------KKACFCGAKRCSG 1372
            |:|                     ||.|.|||..|||
Zfish   247 NSSAETAKLDEKTHVGADGEEIPQKKVCRCGASNCSG 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NSDNP_733239.1 PWWP_NSD_rpt1 395..514 CDD:438972
PHD2_NSD 867..932 CDD:277040
PHD3_NSD 933..988 CDD:277041
PHD4_NSD 1001..1041 CDD:277042
PWWP_NSD_rpt2 1048..1143 CDD:438963
AWS 1183..1233 CDD:197795 13/49 (27%)
SET_NSD 1233..1375 CDD:380950 56/169 (33%)
setmarNP_001107072.2 None
Blue background indicates that the domain is not in the aligned region.

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