DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NSD and phf3

DIOPT Version :9

Sequence 1:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster
Sequence 2:XP_005157087.1 Gene:phf3 / 553518 ZFINID:ZDB-GENE-090313-207 Length:1691 Species:Danio rerio


Alignment Length:1568 Identity:269/1568 - (17%)
Similarity:468/1568 - (29%) Gaps:605/1568 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 DESVATEGDDVEIPRD-----TNNSTPVRL----LDKPGQNPVQNGAQPAAEESELESQRQTPVQ 95
            |:.:..:|..:::.::     .:||||..:    :|:...:.|.....|....:|::....|.|.
Zfish   216 DDGIIADGLGLDLGQNQDEQVVDNSTPEAVGEVSIDQSTSHDVPMDFGPYVNPNEVQDTNSTMVL 280

  Fly    96 KQQQQRVSM--VNRKRDLINLQSALSPKYIGYANANSPTPLSDSDDTIRTTRRRVNQAAALNNSS 158
            |.:.:..:.  ..:|.:.|..|. ||.:..|..|..:..|.     ..:..:.:.:.:||.|..|
Zfish   281 KPKVENATSEDAKKKNNQIKTQK-LSAQKPGNKNGTAARPA-----VKKLLKNKQSLSAAKNKPS 339

  Fly   159 AGETLAHDNASPRTPGGGGGGGGDDSANQLLSKTYMSPIEKLL------------IKNGASSPNS 211
                      ||..||             ||.|....|.:|.:            ||.|...|.:
Zfish   340 ----------SPTKPG-------------LLQKESKHPQDKKIHTGQPEVHKGKPIKVGLKRPGA 381

  Fly   212 T-GFEAGSEDLGIRPIVRKHVKRKMKRVPKAKVTLELDEKNQQEVDEKSVKTEPIDEEVDRTDEA 275
            . |.:.||:   |:.|...|...|... |...::..:.:|:..|    |....|.:.....:|..
Zfish   382 ALGPKDGSK---IQKIQDGHSASKTAS-PSGPLSPTITKKSSSE----SGPLSPTNSRKPSSDSV 438

  Fly   276 PTQEAQTTAISIKSETEAEHKAAVDVHIKQEDTIRLDIVNNPVESTSIVITEEPKDLEKSTEELA 340
            |.           |.|.:.         |..:::.|...|:...|::.| ...|.:..|.:..| 
Zfish   439 PL-----------SPTNSR---------KPSNSVPLSSTNSRKPSSNSV-PLSPSNSRKPSSNL- 481

  Fly   341 FALPLASSTEVDLKSPPDLSSTALATSIKSPSSVSI----DSAKGLSIVTDPGWPTYQVGDLFWG 401
              :||:.:....|.|.   |.....|:.:.|||.|:    .:::..|..:.||..:.|       
Zfish   482 --VPLSPTNSRKLSSD---SGPLSPTNSRKPSSDSVPLSPTNSRRPSSESGPGVKSVQ------- 534

  Fly   402 KVFSYCFWPCMVCPDPLGQIVGNMPSHPQR--SSLDNANVPIQVHVRFFADNGR----RNWIKPE 460
                        .|.|        |..||.  :|.:..|.|:.        |.:    ::.:|.:
Zfish   535 ------------SPHP--------PKKPQNPPTSGNKTNPPVA--------NSQGDEEQDKVKAK 571

  Fly   461 NLLTFAGLKAFDDMREELRIKHGPKSAKYRQM--------VPKRTKVVIWRQAIEEAQAMTQI-- 515
            .:             |:.:.:|  ||...|.:        :|....|| .::|..:|.|.::.  
Zfish   572 KI-------------EKTQQRH--KSRNSRSISIEEPQLFIPDNAPVV-KKEAEGDALAESETVW 620

  Fly   516 -----------PYSDRL--------EKFYQTYE--NVVTLNRQKRKRTKYM------MQDTSDVG 553
                       |:::|.        :.|:....  ::..:.:.:::..:|:      .:|.....
Zfish   621 DPTKNCVLCKKPHNNRFMVGCGRCDDWFHGDCVGLDLAKVQQMEKEDQEYVCLKCCAQEDEKTQA 685

  Fly   554 SSLYDSTDNLHNKQGTQLLAVKRERSESPFSPAFSPV-KSKNEKRAKRRKLSNGTEADTGSNSMA 617
            |.|.|.......||..|         :|..:....|. |...|:|........|......:..:.
Zfish   686 SELSDDKSAAKQKQRPQ---------QSLTAGGIRPFRKDAGERRPSEDSAQKGPNVKHETKKVK 741

  Fly   618 VTPSQTETTVDSSAYENPEFRQLLSAVMEYVMMNRSDE---------------KVEKVLLSVVSN 667
            ::|      |.|........|:.:...:|.:::.||.|               :.||.|.::...
Zfish   742 ISP------VSSKKPSTGHIRRSVRDSLEEILLKRSKESDLKISSDRPAEVARRTEKELFALFQG 800

  Fly   668 I------------WSLKQIQLRELERDLASGEIE---------EPLGSSVVGRGSGVGTIKRLSN 711
            :            ::||..:...|.:.:..||:.         |.|.|      ..:...::..|
Zfish   801 VDSKYKNKYRSLTFNLKDAKNNVLFKRVLKGEVSPADLVRMTAEELAS------KELAAWRKREN 859

  Fly   712 RLMTMMV--------RRSMT--------------PVVTPSTTPAPSEPDRRLSEPPKTKKP---V 751
            |....|:        ||.:|              |...|.......||..::.|.|:.|.|   |
Zfish   860 RHTIEMIEKEQREVERRPITKITHKGEIEIENQEPAKAPEAIEVEPEPVLKVVEVPEEKPPEIKV 924

  Fly   752 NRPIEEVIEDILQLDSKYLFRGLSREPICKYCYQAGSDLVRCSRTCSSWLHADCLERKVTGAPMP 816
            ..|.:.:  |...|...:||     :..||.|                           ||.   
Zfish   925 ESPKKSI--DTTNLHKSHLF-----DLNCKIC---------------------------TGR--- 952

  Fly   817 KIGSRKALVIPPTSKSPSPDEDHVTADAKEVVAVGTSLVCHECNVGEPEGCVICHQVESPAVPST 881
                    :.|||.::           :.:||.|.|::|..:.:..|          ||....:|
Zfish   953 --------MAPPTEEA-----------STKVVKVATTVVRRQSSATE----------ESQPSTTT 988

  Fly   882 PRKE--DSSSHTPIEDKLLTCSQPMCGKRFHTSCCKYWPQASSSKHSARCPRHVCHTCVS----- 939
            |...  |..:...:|:.||                .:.|:  ||:..:.|.:....|.:|     
Zfish   989 PTSALMDDLTLRAMEEGLL----------------NFLPE--SSRADSLCSKEDTATFLSSLESL 1035

  Fly   940 -----DDPS-GKFQQLGSSKLAKCVRCPATYHQLSKCIPAGTQMLNTTNIICPRHNIAKADAHVN 998
                 |.|: .:|       |.|......|...|::.:|...|:                     
Zfish  1036 WGGYVDMPAVARF-------LTKSYLVSGTLDHLTQDLPDNIQV--------------------- 1072

  Fly   999 VLWCYICVKGGELVCCETCPIAVHAHCRNIPIKTNESYICEECESGRLPLYGEIVWAKFNNFRWW 1063
                     ||.:     .|                                :|||......|  
Zfish  1073 ---------GGRI-----SP--------------------------------QIVWDYVEKIR-- 1089

  Fly  1064 PAIILPPTEVPSNILKKAHGENDF-VVRFFGTHDHGWISRRRVYLYIEGDTGDGHKTKSQLFRNY 1127
                             |.|..:. |:||....:...||...:|.|....            |.|
Zfish  1090 -----------------ASGTKEICVIRFSPDTEEDEISYTLLYAYFSSR------------RRY 1125

  Fly  1128 TTGVEEASRFLPIIKARRQEQDMERQSGNKLHPPPYVKIKTNKAVPPLRFSQNLEDLSTCNCLPV 1192
              ||        :...|:|.:||.           .:.:.:.:.:|.             ..:|.
Zfish  1126 --GV--------VANNRKQVKDMY-----------LIPLGSTEKIPH-------------QIVPF 1156

  Fly  1193 DEHPCGPEAGCLNRMLFNECNPEYCKAGSLCENRMFEQRKSPRLEVVYMNERGFGLVNREPIAVG 1257
            |    ||..         |.|......|.:.       |:.|:        |.||::....::..
Zfish  1157 D----GPGL---------ETNRPNLLLGLII-------RQRPK--------RDFGVILPSDVSEA 1193

  Fly  1258 DFVIEYVGEVINHAEFQRRMEQKQRDRDENYYFLGVEKDFIIDAGPKGNLARFMNHSCEPNCETQ 1322
            ...:         ||.:.:::..|:    ....|..|:.||.|.|.    ||            :
Zfish  1194 PSFL---------AESKPQVDYPQK----TPVALDTEQSFISDLGN----AR------------K 1229

  Fly  1323 KWTVNCIHRVGIFAIKDIPVNSELTFNYLWDDLMNNSKKACFCGAKRCSGEIGGKLKDDAVKAHA 1387
            |.|.:.|..|....|.|...:..::..:| ..::...:||..|.        ...:|.|:.|..|
Zfish  1230 KDTTDLIKSVVEEPILDTETDENVSLRFL-PGVLKLPEKAASCS--------NDNMKSDSTKTEA 1285

  Fly  1388 KLKQMRRAK---------ASAVRI--HVKPKKTPK-VKH---------------------ISADD 1419
            |...:....         |||.|:  .|..||.|| ||.                     :|..|
Zfish  1286 KTPSVDSGNNATVSPKPIASAPRLDRFVIKKKEPKAVKTEQAPVSVSLEISSEKKETAVVLSLSD 1350

  Fly  1420 EPMDAKDE 1427
            :|.|...|
Zfish  1351 KPADVSTE 1358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NSDNP_733239.1 MSH6_like 391..508 CDD:99898 20/130 (15%)
PHD2_NSD 867..932 CDD:277040 12/66 (18%)
PHD3_NSD 933..988 CDD:277041 11/65 (17%)
PHD4_NSD 1001..1041 CDD:277042 3/39 (8%)
WHSC1_related 1047..1141 CDD:99899 17/94 (18%)
AWS 1183..1233 CDD:197795 8/49 (16%)
SET 1234..1354 CDD:214614 22/119 (18%)
phf3XP_005157087.1 DUF4045 <341..732 CDD:330572 88/498 (18%)
PHD_PHF3 625..675 CDD:277108 4/49 (8%)
TFIIS_M 755..863 CDD:311443 18/113 (16%)
SPOC 1027..1176 CDD:311609 43/307 (14%)
Endomucin 1271..>1449 CDD:330316 22/96 (23%)
RRM 1605..>1690 CDD:330708
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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