DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NSD and phf20b

DIOPT Version :9

Sequence 1:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster
Sequence 2:XP_005162050.1 Gene:phf20b / 445482 ZFINID:ZDB-GENE-040822-33 Length:1030 Species:Danio rerio


Alignment Length:958 Identity:176/958 - (18%)
Similarity:299/958 - (31%) Gaps:317/958 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 PVQKQQQQ-RVSMVNRKRDLINLQSALSPKYIGYANANSPTPLSDSDDTIRTTRRRVNQAAALNN 156
            |.:||... |.:...|||...| :..|.||..|.:..||             :|..|:.....:.
Zfish   135 PFRKQSSDGRSNQQARKRADQN-EKELKPKENGNSRHNS-------------SRHSVSDHDGESE 185

  Fly   157 SSAGE-TLAHDNASPRTPGGGGGGGGDDSANQLLSKTYMSPIEKLLIKNGASSPNSTGFEAGSED 220
            |.|.| |...|.::...    .||..:.:..::::.:.:|         .|....|......|||
Zfish   186 SEADEDTTVMDESTDLQ----NGGEKESTETKMVNDSEVS---------SAEHQPSEDQNQPSED 237

  Fly   221 LGIRPIVRKHVKRKMKRVPKAKVTLELDEKNQQEVDEKSVKTEPIDEEVDRTDEAPTQEAQTTAI 285
                         |.:.:....|.::::|:.::|:|....:.:.:...:|:.|| ...||...:.
Zfish   238 -------------KTENLENGNVEIKIEEEEEEEMDGGQEEAKVLHNGIDKNDE-HKGEASDESP 288

  Fly   286 SIKSETEAEHKAAVDVHIKQEDTIRLDIVNNPVESTSIVITEEPKDLEKSTEELAFALPLASSTE 350
            |:...|.:          :..|....::||.|........|.:....::|...        |||:
Zfish   289 SLPKRTRS----------RTADGKEAEMVNGPELRKRRASTGQTSPAKRSRAN--------SSTD 335

  Fly   351 VDLKSPPDLSSTALATSIKS---PSSVSIDSAKGLSIVTDPGW---PTYQVGDLFWGKVFSYCFW 409
            .:.::|        ...:||   |.::.|...|     |.|..   |..:.|..           
Zfish   336 RNTQTP--------IKPVKSDSVPDTLDIKDEK-----TSPAGKPAPAEEAGST----------- 376

  Fly   410 PCMVCP---------------DPLGQIVGNMPSHPQRSSLDNANVPIQVHVRFFADNGRRNWIKP 459
            |.:...               :||.:::.|.|  |...|::..:.|.:..:              
Zfish   377 PELAAALKRQVHLPTTNKYSREPLYRVIKNQP--PPILSIELDHNPFKCKM-------------- 425

  Fly   460 ENLLTFAG-LKAFDD---MREELRIKHG------PKSAKYR--------QMVPKRTKVVIWRQAI 506
                  || ||:|..   :...::..|.      |:..:.|        |..|:|.:.|      
Zfish   426 ------AGCLKSFRKASLLHYHMKYYHAQSDPSPPRCVQTRSSDKQSPSQETPRRRRTV------ 478

  Fly   507 EEAQAMTQIPYSDRLEKFYQTYENVVTLNRQKRKRT--KYMMQDTSDVGSSLYDSTDNLHNKQGT 569
             .|...|..|.||. :..:......|.:..::|..|  ....::......||:|..|.:..:...
Zfish   479 -SASHHTPSPLSDS-KSGHSLSPPAVGIKHRQRSATLGAERSKENQVFNRSLHDDRDWVAKETAL 541

  Fly   570 QLLAVKRERSESPFSPAFSPVKSKNEKRAKRRKLSNGTEADTGSNSMAVTPSQTETTVDSSAYEN 634
            :    :|||........|..:|.|.:|:.||:     :::|:.|...::.|......: :||::.
Zfish   542 K----ERERLREKRQREFFRIKLKKKKKKKRK-----SKSDSHSTEESIGPKPLPCNL-NSAHKL 596

  Fly   635 P---EFRQLLSAVMEYVMMNRSDEKVEKVLLSVVSNIWSLKQIQLRELERDLASGEIEEPLGSSV 696
            |   ..|.......|.::....|...:   ||..|.:||       |.|.| ...::..||..  
Zfish   597 PLSLTHRSYTGHGPEKMLSQGEDSSSD---LSSDSPVWS-------EDESD-TELDLNVPLSE-- 648

  Fly   697 VGRGSGVGTIKRLSNRLMTMMVRRSMTPVV------------------TPSTTPAPSEPDR---R 740
                .||.|:...|.      :.|.:..|.                  |.......|.||.   .
Zfish   649 ----QGVETVTHSSE------IVRCICEVQEENDFMIQCDECLCWQHGTCMGLYEDSVPDSYSCY 703

  Fly   741 LSEPPKTKKPVNRPIEEVIEDILQLDSKYLFRGLS--REPICKYCYQAGSDLVRCSRTCSS---- 799
            :...|    |..|..:....|...|.|.::: |||  .|   .|.:|....:....:....    
Zfish   704 ICRDP----PAQRQSQRYWYDKDWLSSGHMY-GLSFLEE---NYSHQNSKKVTAAHQLLGDVHRV 760

  Fly   800 ----------------------------WLHADCLERKVTGAPMPKIGSRKALVIPPT------- 829
                                        |.|||.|.|::.|      .|..|..:||:       
Zfish   761 FEVLNGLQLKMSILQTQAHPDLKLWRQPWKHADGLRRRMAG------DSGIATPLPPSPPEMGEN 819

  Fly   830 ------SKSPSPDEDHVTADAKEVVAVGTSLVCHECNVGEPEGCVICHQVESPAVPSTPRK---- 884
                  |::|||.|.|.:..        .|.:..|          .|:|......|:..|:    
Zfish   820 EFETLKSEAPSPMETHCSFQ--------DSYISSE----------HCYQKPRTYYPAVERRLVVE 866

  Fly   885 -------EDSSSHTPIEDKLLTCSQPMCGKRFHTSCCKYWPQASSSKH 925
                   |||...|  ||.|....|            :|..|....:|
Zfish   867 TRGGSELEDSLRST--EDLLEMAEQ------------RYGTQLDHDQH 900

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NSDNP_733239.1 MSH6_like 391..508 CDD:99898 22/149 (15%)
PHD2_NSD 867..932 CDD:277040 15/70 (21%)
PHD3_NSD 933..988 CDD:277041
PHD4_NSD 1001..1041 CDD:277042
WHSC1_related 1047..1141 CDD:99899
AWS 1183..1233 CDD:197795
SET 1234..1354 CDD:214614
phf20bXP_005162050.1 MBT 1..68 CDD:302657
TUDOR 90..135 CDD:119391 176/958 (18%)
PHD_PHF20 662..705 CDD:277104 6/42 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

Return to query results.
Submit another query.