DRSC/TRiP Functional Genomics Resources

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Protein Alignment NSD and Su(var)3-9

DIOPT Version :10

Sequence 1:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster
Sequence 2:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster


Alignment Length:405 Identity:92/405 - (22%)
Similarity:142/405 - (35%) Gaps:131/405 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1087 FVVRFFGTHD--HGWISRRRVYLYIEGDTGDGHK---TKSQLFRNY----TTGVEEASRFLPII- 1141
            |.|::.|.||  :.|.|...|     .|..:..|   ...||:..|    ||.:|:....||:: 
  Fly   236 FFVKWLGYHDSENTWESLANV-----ADCAEMEKFVERHQQLYEIYIAKITTELEKQLEALPLME 295

  Fly  1142 ------------------------------KARRQEQDMERQS--GNKLHPPPYVKIK------- 1167
                                          :::|:.|.:..::  ..::....:|:.|       
  Fly   296 NITVAEVDAYEPLNLQIDLILLAQYRAAGSRSQREPQKIGERALKSMQIKRAQFVRRKQLADLAL 360

  Fly  1168 -------TNKAVPPLRFSQNLEDLST--------------------------CNCLPVDEHPCGP 1199
                   ..|..||:|...|: ||.|                          |.|.. |...|..
  Fly   361 FEKRMNHVEKPSPPIRVENNI-DLDTIDSNFMYIHDNIIGKDVPKPEAGIVGCKCTE-DTEECTA 423

  Fly  1200 EAGCLNRM---LF-----------------NECNPEYCKAGSLCENRMFEQ-RKSPRLEVVYMNE 1243
            ...|..|.   ||                 .|||.. |...|.|.||:.:. |:.|.:.....|.
  Fly   424 STKCCARFAGELFAYERSTRRLRLRPGSAIYECNSR-CSCDSSCSNRLVQHGRQVPLVLFKTANG 487

  Fly  1244 RGFGLVNREPIAVGDFVIEYVGEVINHAEFQRRMEQKQRDRDENYYF-----LGVEKDFIIDAGP 1303
            .|:|:.....:..|:||.||:||:|...|...| .:...|....|.|     ...:.::.|||..
  Fly   488 SGWGVRAATALRKGEFVCEYIGEIITSDEANER-GKAYDDNGRTYLFDLDYNTAQDSEYTIDAAN 551

  Fly  1304 KGNLARFMNHSCEPN-----CETQKWTVNCIHRVGIFAIKDIPVNSELTFNYL--------WDDL 1355
            .||::.|:||||:||     |..:...|...|.| .|.::.|....||:|:|:        :::|
  Fly   552 YGNISHFINHSCDPNLAVFPCWIEHLNVALPHLV-FFTLRPIKAGEELSFDYIRADNEDVPYENL 615

  Fly  1356 MNNSKKACFCGAKRC 1370
            ....:..|.|||..|
  Fly   616 STAVRVECRCGADNC 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NSDNP_733239.1 PWWP_NSD_rpt1 395..514 CDD:438972
PHD2_NSD 867..932 CDD:277040
PHD3_NSD 933..988 CDD:277041
PHD4_NSD 1001..1041 CDD:277042
PWWP_NSD_rpt2 1048..1143 CDD:438963 18/95 (19%)
AWS 1183..1233 CDD:197795 20/96 (21%)
SET_NSD 1233..1375 CDD:380950 45/156 (29%)
Su(var)3-9NP_524357.2 PTZ00327 11..>80 CDD:240362
Chromo 219..268 CDD:459793 10/36 (28%)
SET_SUV39H 388..634 CDD:380940 62/247 (25%)
Blue background indicates that the domain is not in the aligned region.

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