DRSC/TRiP Functional Genomics Resources

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Protein Alignment NSD and Suv39h2

DIOPT Version :10

Sequence 1:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster
Sequence 2:XP_038951911.1 Gene:Suv39h2 / 364785 RGDID:1306969 Length:511 Species:Rattus norvegicus


Alignment Length:578 Identity:132/578 - (22%)
Similarity:203/578 - (35%) Gaps:161/578 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   870 CHQVESPAVPSTPRKEDSSSHTPIEDKLLTCSQPMCGKRFHTSCCKYWPQASSSKHSARCPRHVC 934
            ||:  :|..|..|:...::.....:......|:...|.|          :|.|::..:|.||...
  Rat    17 CHR--APGPPQRPKPRRTTRRCRADTVTARRSRSSAGGR----------RAGSNRARSRAPRAAV 69

  Fly   935 HTCVSDDPSGKFQQLGSSKLAKCVRCPATYHQLSKCIPAGTQMLNTTNIICPRHNIAKADAHV-- 997
            ..                  .:|.| .|::.:.|     |..||   .|..|...|.:|....  
  Rat    70 FG------------------GECAR-GASFKEFS-----GLCML---KIYFPMRKINEAKISAVF 107

  Fly   998 --NVLWCYICVKGGELVCCETCPIAVHAH---CRNIPI-KTN-----ESYICEECESGRLPLYGE 1051
              ...||..|     ||..:|........   |::|.| |.|     ..|:|:         |..
  Rat   108 QNGKAWCVPC-----LVSLDTLQELCRKEKLTCKSIGITKRNLNNYEVEYLCD---------YKV 158

  Fly  1052 IVWAKFNNFRW--WPAIILPPTEVPSNILKKAHGENDFVVRFFGTHDHGWISR-----------R 1103
            :...::...:|  ||...                         .|.:..|..|           :
  Rat   159 VKGVEYYLVKWKGWPDST-------------------------NTWEPLWNLRCPQLLQQFSDDK 198

  Fly  1104 RVYLYIEGDTGDGHKTKSQLFRNYTTGVEEASRFLPIIKAR------RQEQDMERQSGNK----- 1157
            ..||      ..|.|.|:...::....::.|.....:.|||      |.:..:.|:..:|     
  Rat   199 NTYL------SQGRKRKAITSKDNNKSLQPAVAEYIVQKARQRIALQRWQDYLNRRKNHKGMIFV 257

  Fly  1158 -----LHPPPYVKIKTNKAVPPLRFSQNLEDLSTCNCLPVDEHPCGP-EAGCL-----NRML--- 1208
                 |..||......|:..|....:.|.|....|:|.......|.| |||.:     ||.:   
  Rat   258 ENTVDLEGPPSDFYYINEYRPAPGITLNSEATFGCSCTNCFFEKCCPAEAGVVLAYNKNRQIKIQ 322

  Fly  1209 ----FNECNPEYCKAGSLCENRMFEQRKSPRLEVV-YMNERGFGLVNREPIAVGDFVIEYVGEVI 1268
                ..|||.. |:.|..|.||:.::.....|.:. ..|..|:|:.....|....||:|||||||
  Rat   323 PGTPIYECNSR-CRCGPDCPNRIVQKGTQYSLCIFRTSNGCGWGVKTLVKIKRMSFVMEYVGEVI 386

  Fly  1269 NHAEFQRRMEQKQRDRDENYYF-LGVEKD-FIIDAGPKGNLARFMNHSCEPNCETQKWTVNCIH- 1330
            ...|.:|| .|...::...|.| |..|.| |.:||...||::.|:||||:||.:.....::.:. 
  Rat   387 TSEEAERR-GQLYDNKGITYLFDLDYESDEFTVDAARYGNVSHFVNHSCDPNLQVFSVFIDNLDT 450

  Fly  1331 ---RVGIFAIKDIPVNSELTFNY-------LWDDLMNNS------KKACFCGAKRCSG 1372
               |:.:|:.:.|....||||:|       |..|.::.|      :..|.|||:.|.|
  Rat   451 RLPRIALFSTRTIKAGEELTFDYQMKGSGELSSDSIDYSPARKRVRTQCKCGAETCRG 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NSDNP_733239.1 PWWP_NSD_rpt1 395..514 CDD:438972
PHD2_NSD 867..932 CDD:277040 12/61 (20%)
PHD3_NSD 933..988 CDD:277041 9/54 (17%)
PHD4_NSD 1001..1041 CDD:277042 13/48 (27%)
PWWP_NSD_rpt2 1048..1143 CDD:438963 13/107 (12%)
AWS 1183..1233 CDD:197795 17/62 (27%)
SET_NSD 1233..1375 CDD:380950 52/160 (33%)
Suv39h2XP_038951911.1 CD_SUV39H1_like 148..196 CDD:349289 9/81 (11%)
SET_SUV39H2 268..510 CDD:380930 73/243 (30%)
Blue background indicates that the domain is not in the aligned region.

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