DRSC/TRiP Functional Genomics Resources

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Protein Alignment NSD and Set1

DIOPT Version :9

Sequence 1:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster
Sequence 2:NP_001015221.1 Gene:Set1 / 3354971 FlyBaseID:FBgn0040022 Length:1641 Species:Drosophila melanogaster


Alignment Length:1482 Identity:274/1482 - (18%)
Similarity:493/1482 - (33%) Gaps:518/1482 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 ASDSLTATDEVAAGNDESVATEGDDVEIPRDTNNS-TPVRLLDKPGQNPVQNGAQPAAEESELES 88
            :|||  .||:   |..|..:      ::..|:||| ...|..:|  .|.|.:  || .|.|::.|
  Fly   545 SSDS--ETDQ---GKPEVFS------DVNSDSNNSENKKRSCEK--NNKVLH--QP-NEASDISS 593

  Fly    89 QRQTPVQKQQQQRVSMVNRKR---DLINLQSALSPKYIGYANANSPTPLSDSDDTIRTTRRRVNQ 150
            ..:. :.|:.:.::|::..|.   |.::|.|                 ||..:|.|:|     .:
  Fly   594 DEEL-IGKKDKSKLSLICEKEVNDDNMSLSS-----------------LSSQEDPIQT-----KE 635

  Fly   151 AAALNNSSAGETLAHDNASP---RTPGGGG--GGGGDDSANQLLS------KTYMSPIEKLLIKN 204
            .|...:..:....:|.|.:|   ...|.|.  .|...:||::|.|      ..|:..:...   |
  Fly   636 GAEYKSIMSSYMYSHSNQNPFYYHASGYGHYLSGIPSESASRLFSNGAYVHSEYLKAVASF---N 697

  Fly   205 GASSPNSTGFEAGS---EDLGIRPIVRK---HVKRKMKRVPKAKVT---LELDEKNQQEV--DEK 258
            ..|......:..|:   ::.|||..|::   ::..::|::.|..|.   :|:......|.  ||.
  Fly   698 FDSFSKPYDYNKGALSDQNDGIRQKVKQVIGYIVEELKQILKRDVNKRMIEITAFKHFETWWDEH 762

  Fly   259 SVK--TEPIDEEVDRTDEAPTQEAQTTAISIKSETEAEHKAAVDVHIKQEDTIRLDIVNNPVEST 321
            :.|  ::|:.|:.|.|...|.                                      |.::.|
  Fly   763 TSKARSKPLFEKADSTVNTPL--------------------------------------NCIKDT 789

  Fly   322 SIVITEEPKDLEKSTEELAFALPLASSTEVDLKSPPDLSSTALATSIKSPSSVSIDSAKGLSIVT 386
            |  ..|:..|:.         |.:.:..||              ...:|.||:.:.:|.      
  Fly   790 S--YNEKNPDIN---------LLINAHREV--------------ADFQSYSSIGLRAAM------ 823

  Fly   387 DPGWPTYQVGDLFWGKVFSYCFWPCMVCPDP-------LGQIVGNMPSHPQRSSLD--NANVPIQ 442
             |..|:::       ::..:        |.|       |.:.:.:.....|||..|  ::||.|.
  Fly   824 -PKLPSFR-------RIRKH--------PSPIPTKRNFLERDLSDQEEMVQRSDSDKEDSNVEIS 872

  Fly   443 VHVRFFADNGRRNWIKPENLLTFAGLKAFDDMREELRIKHGPKSAKYRQMVPKRTKVVIWRQAIE 507
                                         |..|.:::   ||                       
  Fly   873 -----------------------------DTARSKIK---GP----------------------- 882

  Fly   508 EAQAMTQIPYSDRLEKFYQTYENVVTLNRQKRKRTKYMMQDTSDVGSSL-YDSTDNLHNKQGTQL 571
                   :|..:...|.:.:..|    :::|...:.:....:|...|.. |::.|          
  Fly   883 -------VPIQESDSKSHTSGLN----SKRKGSASSFFSSSSSSTSSEAEYEAID---------- 926

  Fly   572 LAVKRERSESPFSPAFSPVKSKNEKRAKRRK--------LSNGTEADTGSNSMA---VTPSQTET 625
             .|::.|:....||.....::.|::....|.        :.|.....:|||...   || .:|:.
  Fly   927 -CVEKARTSEEDSPRGYGQRNLNQRTTTIRNRNLVGTMDVINVRNLCSGSNEFKKENVT-KRTKK 989

  Fly   626 TVDSSAYENPEFRQLLSAVMEYVMMNRSDEKVEKVLLSVVSNIWSLKQIQLRELERDLASGEIEE 690
            .:.|...|:.: |.|..|:.            ||.:.:::|:        |.|:.:|...|..|.
  Fly   990 NIYSDTDEDND-RTLFPALK------------EKNISTILSD--------LEEISKDSCIGLDEN 1033

  Fly   691 PLGSSVVGRGSGVGTIKRLSNR-LMTMMVRRSMTPVVTP-----------STTPAPS-EPDRRLS 742
            .:..::         ::::.|. .:....|||:|||..|           .....|| |.||..|
  Fly  1034 GIEPTI---------LRKIPNTPKLNEECRRSLTPVPPPGYNEEEIKKKVDCKQKPSFEYDRIYS 1089

  Fly   743 EPPKTKKPVNRP------IEEVIEDILQLDSKYLFRGLSREPICKYCYQAGSDLVRCSRTCSSWL 801
            :..:.|:...|.      :.::..:.|:...|.:.:.|.:.      .|:.:::|:.:.:     
  Fly  1090 DSEEEKEYQERRKRNTEYMAQMEREFLEEQEKRIEKSLDKN------LQSPNNIVKNNNS----- 1143

  Fly   802 HADCLERKVTGAPMPKIGSRKALVIPPTSKSPSPDEDHVTADAKEVVAVGTSLVCHECNVGEPEG 866
                                      |.:|:   ||...|       |:..:..|.|.       
  Fly  1144 --------------------------PRNKN---DETRKT-------AISQTRSCFES------- 1165

  Fly   867 CVICHQVESPAVPSTPRKEDSSSHTPIED---------KLLTCSQPMCGKRFHTSCCKYWPQASS 922
               ..:|::..|.....:.|.:...|.|:         |:.|.|:   ||...|....|....||
  Fly  1166 ---ASKVDTTLVNIISVENDINEFGPHEEGDVLTNGCNKMYTNSK---GKTKRTQSPVYSEGGSS 1224

  Fly   923 S---------KHSARCPRHVCHTCVSDDPSGKFQQ--------------------LGSSKLAK-- 956
            .         :|....|.|  ...:.|.||||..:                    .|..:..|  
  Fly  1225 QASQASQVALEHCYSLPPH--SVSLGDYPSGKVNETKNILKREAENIAIVSQMTRTGPGRPRKDP 1287

  Fly   957 -CVR------CPATYHQLSKCIPAGTQM-----LNTTNIICPRHNIAKADAHVNVLWCYICVKG- 1008
             |::      .|...:..||..|.|.:.     .|...:.|..:.....:..:.:|:.:: .|| 
  Fly  1288 ICIQKKKRDLAPRMSNVKSKMTPNGDEWPDLAHKNVHFVPCDMYKTRDQNEEMVILYTFL-TKGI 1351

  Fly  1009 -GELVCCETCPIAVHAHCRNIPIKTNESYICEECESGRLPLYGEIVWAKFNNFRWWPAIILPPTE 1072
             .|.:.........|.|.....:..|.::..:.|.:.|               .:||    ||: 
  Fly  1352 DAEDINFIKMSYLDHLHKEPYAMFLNNTHWVDHCTTDR---------------AFWP----PPS- 1396

  Fly  1073 VPSNILKKAHGENDFVVRFFGTHDHGWISRRRVYLYIEGDTGDGHKTKSQLFRNYTTGVEEASRF 1137
                   |...::|.::|                          ||          ||......|
  Fly  1397 -------KKRRKDDELIR--------------------------HK----------TGCARTEGF 1418

  Fly  1138 LPIIKARRQEQDMERQSGNKLHPPPYVKIKTNKAVPPLRFSQNLEDLSTC------NCLPVDEHP 1196
            ..:        |:..::.:|.|   |.|..|..:     |:::..|..|.      |.|......
  Fly  1419 YKL--------DVREKAKHKYH---YAKANTEDS-----FNEDRSDEPTALTNHHHNKLISKMQG 1467

  Fly  1197 CGPEAGCLNRMLFNECNPEYCKAGSLCENRM--FEQRKSPRLEVVYMNE--RGFGLVNREPIAVG 1257
            ...||....|.|..       ..||:.|:.:  |.|.|..:.::.:...  ..:||...||||..
  Fly  1468 ISREARSNQRRLLT-------AFGSMGESELLKFNQLKFRKKQLKFAKSAIHDWGLFAMEPIAAD 1525

  Fly  1258 DFVIEYVGEVINHAEFQRRMEQKQRDRDENYYFLGVEKDFIIDAGPKGNLARFMNHSCEPNCETQ 1322
            :.||||||::|.......|..:.:.....:.|...::.:.||||...||||||:||||.|||..:
  Fly  1526 EMVIEYVGQMIRPVVADLRETKYEAIGIGSSYLFRIDMETIIDATKCGNLARFINHSCNPNCYAK 1590

  Fly  1323 KWTVNCIHRVGIFAIKDIPVNSELTFNYLWDDLMNNSKKACFCGAKRCSGEI 1374
            ..|:....::.|::.:.|.:|.|:|::|.:.  :.:.|..|.|||:.|.|.:
  Fly  1591 VITIESEKKIVIYSKQPIGINEEITYDYKFP--LEDEKIPCLCGAQGCRGTL 1640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NSDNP_733239.1 MSH6_like 391..508 CDD:99898 15/125 (12%)
PHD2_NSD 867..932 CDD:277040 16/82 (20%)
PHD3_NSD 933..988 CDD:277041 15/88 (17%)
PHD4_NSD 1001..1041 CDD:277042 6/41 (15%)
WHSC1_related 1047..1141 CDD:99899 12/93 (13%)
AWS 1183..1233 CDD:197795 13/57 (23%)
SET 1234..1354 CDD:214614 39/121 (32%)
Set1NP_001015221.1 RRM_Set1 99..191 CDD:240750
DUF1777 255..>380 CDD:285811
PRP38_assoc <318..388 CDD:289628
N-SET 1341..1492 CDD:288597 39/237 (16%)
SET <1463..1641 CDD:225491 56/187 (30%)
SET 1504..1625 CDD:214614 39/122 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
21.940

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