DRSC/TRiP Functional Genomics Resources

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Protein Alignment NSD and set1

DIOPT Version :9

Sequence 1:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster
Sequence 2:NP_587812.1 Gene:set1 / 2538762 PomBaseID:SPCC306.04c Length:920 Species:Schizosaccharomyces pombe


Alignment Length:299 Identity:76/299 - (25%)
Similarity:119/299 - (39%) Gaps:77/299 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1099 WISRRRVYLYIEGDTGDGHKT----KSQLFRNYTTGVEEASRFLPIIKARRQEQDMERQSGNKLH 1159
            |...|:...:..||...|...    ....||:.|:|..::..:                      
pombe   671 WAYERKSCKFKNGDVKYGDTAILPEPKGYFRSNTSGSAKSEGY---------------------- 713

  Fly  1160 PPPYVKIKTNKAV-PPLRFSQNLEDLSTCNCLPVDEHPCGPEAGCLNRMLFNECNPEYCKAG--- 1220
               |:...|.|:: .|||....::.:|         |........:||:     |.....||   
pombe   714 ---YIIPTTEKSLYLPLRNRSTIDTIS---------HSTSRITSRMNRV-----NNRRLAAGVEK 761

  Fly  1221 ----SLCENRMFEQRKSPRLEVVYMNER--GFGLVNREPIAVGDFVIEYVGEVINHAEFQRRMEQ 1279
                :..:...|...|:.:.::.:...|  ..||...|.|...|.||||:||:|           
pombe   762 SQLPAEADLLRFNALKARKKQLHFGPSRIHTLGLFAMENIDKNDMVIEYIGEII----------- 815

  Fly  1280 KQR---DRDENY--------YFLGVEKDFIIDAGPKGNLARFMNHSCEPNCETQKWTVNCIHRVG 1333
            :||   :|::||        |...:::|.|:||..|||:|||:||||.|||..:...|....::.
pombe   816 RQRVADNREKNYVREGIGDSYLFRIDEDVIVDATKKGNIARFINHSCAPNCIARIIRVEGKRKIV 880

  Fly  1334 IFAIKDIPVNSELTFNYLWDDLMNNSKKACFCGAKRCSG 1372
            |:|.:||....|||::|.:.:  ...|..|.|||..|.|
pombe   881 IYADRDIMHGEELTYDYKFPE--EADKIPCLCGAPTCRG 917

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NSDNP_733239.1 MSH6_like 391..508 CDD:99898
PHD2_NSD 867..932 CDD:277040
PHD3_NSD 933..988 CDD:277041
PHD4_NSD 1001..1041 CDD:277042
WHSC1_related 1047..1141 CDD:99899 9/45 (20%)
AWS 1183..1233 CDD:197795 8/56 (14%)
SET 1234..1354 CDD:214614 45/132 (34%)
set1NP_587812.1 RRM <90..>226 CDD:223796
RRM_spSet1p_like 96..180 CDD:240749
SET_assoc 279..342 CDD:288600
SET 457..920 CDD:225491 76/299 (25%)
N-SET 641..771 CDD:288597 22/138 (16%)
SET 783..899 CDD:214614 45/126 (36%)
PostSET 904..920 CDD:214703 7/14 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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