DRSC/TRiP Functional Genomics Resources

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Protein Alignment NSD and set-6

DIOPT Version :10

Sequence 1:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster
Sequence 2:NP_510003.2 Gene:set-6 / 181371 WormBaseID:WBGene00008206 Length:708 Species:Caenorhabditis elegans


Alignment Length:341 Identity:71/341 - (20%)
Similarity:117/341 - (34%) Gaps:102/341 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1165 KIKTNKAVPPLRFSQNLEDLSTCNCLPVDEHPCGPEAGCLNR----------------------- 1206
            |:|.......::.:.:.|::..|.|...|     |...|.:.                       
 Worm   346 KVKEPLLYEAIKIAGSSENVIRCKCCSQD-----PVVNCFDNKDCPCFIANQFLQSRNKTTDTNE 405

  Fly  1207 ---------MLFNECNPEY-----------CKAGSLCENR--MFEQRKSPRLEVVYMNER-GFGL 1248
                     :::|:.||.|           |.....|.|.  ...|:|...:|:...:.: |||:
 Worm   406 KLKFHTFQPLMYNDGNPTYYNTVGFACSPKCACKGACTNNATYLIQKKLYSIEIYRADPQIGFGI 470

  Fly  1249 VNREPIAVGDFVIEYVGEVINHAEFQRRME--------------------QKQRDRDENYYFLG- 1292
            .:...|..|..:|||.||:::.......:|                    :|.::..|.|..|. 
 Worm   471 RSTLFIPAGTPIIEYCGELVDGERLHSSLENYSYQLTDCEGDKHLYNLLREKYKNNPEYYDVLDE 535

  Fly  1293 -VEKDFIIDAGPKGNLARFMNHSCEPNCET----QKWTVNCIHRVGIFAIKDIPVNSELTFNYLW 1352
             .:..|.:||..:|::.||.||||.||.|.    ::.......|:..|.:|||.....||.:| .
 Worm   536 LSKHHFHLDAKMQGSVGRFANHSCTPNMEPLRLFKEGFTPANMRMIFFTLKDIFPGEPLTLDY-G 599

  Fly  1353 DDLMNNSKKACFCGAKRC-SG-------EIGGKLKDDA-VKAHAKLKQMRRAKASAVRIHVKPK- 1407
            .:.....::.|.|....| ||       .:.|||.... |:.|         .||.:|..|..: 
 Worm   600 SEYKVFRRQRCLCRTFACRSGPHYEKFSNLDGKLIASCFVRLH---------HASRIRYSVDLQL 655

  Fly  1408 -----KTPKVKHISAD 1418
                 ...||:.:..|
 Worm   656 IERFYSVGKVEEVRVD 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NSDNP_733239.1 PWWP_NSD_rpt1 395..514 CDD:438972
PHD2_NSD 867..932 CDD:277040
PHD3_NSD 933..988 CDD:277041
PHD4_NSD 1001..1041 CDD:277042
PWWP_NSD_rpt2 1048..1143 CDD:438963
AWS 1183..1233 CDD:197795 13/94 (14%)
SET_NSD 1233..1375 CDD:380950 42/176 (24%)
set-6NP_510003.2 SET 455..603 CDD:214614 37/148 (25%)
Blue background indicates that the domain is not in the aligned region.

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