DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NSD and setd2

DIOPT Version :9

Sequence 1:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster
Sequence 2:XP_012820433.2 Gene:setd2 / 100492810 XenbaseID:XB-GENE-995488 Length:2997 Species:Xenopus tropicalis


Alignment Length:1492 Identity:296/1492 - (19%)
Similarity:507/1492 - (33%) Gaps:488/1492 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 KLSTDAHSEIEGDAAHGNVLCNSASDSLTATDEVAAGND--ESVATEGDDVEIPRDTNNSTP--V 62
            |:|.|:.|.     :|     ..:.||.:.:.:|:..:.  ....:|....:.|:..:|..|  .
 Frog  1031 KVSEDSQSR-----SH-----KVSEDSQSRSHKVSEDSQSRSHKVSEDPQPKTPKKIDNQRPRTP 1085

  Fly    63 RLLD--KPGQNPVQNGAQPAAEESELESQRQTPVQKQQQQRVSMVNRKRDLINLQSALSPKYIGY 125
            .::|  :|......:.|||...:...:.|.:.|...:..|:.|                      
 Frog  1086 EIIDDLQPSTPKETDNAQPRTFKETDDLQHRLPYAAEDMQQRS---------------------- 1128

  Fly   126 ANANSPT----PLSDSDDTIRTTRRRVNQAAALNNSSAG-----------ETLAHDNASPRTPGG 175
            |||:..|    |....|...||:  :||......:...|           :::.||::.|:|   
 Frog  1129 ANASDNTHPKIPKEGEDPKPRTS--KVNDGFQPKDHKDGNHLHSETNTIADSVDHDDSHPQT--- 1188

  Fly   176 GGG----GGGDDSANQLLSKTYMSPIEKLLIKNGASSPNSTGFEAGSEDLGIR----------PI 226
                   .|.:.|.|::..               .:.|::.|.:...|::.:.          |:
 Frog  1189 ---HILIDGSEPSTNEVFK---------------INKPDTVGVQIPIEEVDLPHDSTEIKASIPV 1235

  Fly   227 VRKHVKRKMKRVPKAKVTLELDEKNQQEVDEKSVKTEPIDEEVDRTDEA-PTQEAQTTAISIKSE 290
            | :|:::.:::..:.:|||........|.|...:..:...|.|.:.:.. ...|.|:...|::::
 Frog  1236 V-EHLEKSLEQCEEVEVTLAKCPSRTLETDASEMLIDKYLEHVHKPETCHSVPECQSEMASVRTD 1299

  Fly   291 TEAEHKAAVDVHIKQEDTIRLDIVNNPVESTSIVITEE-PKDLEKSTEELAFALPLASSTEVDLK 354
            ...|.:.  :..:.|:.|..|       ...||.:.:: |..:.....|   .:.:|..|.:.:.
 Frog  1300 PTTEEQN--EFEMGQKGTAEL-------LKASINLNQDLPGQVSGHLPE---GISVAEETAISVA 1352

  Fly   355 SPPDLSSTALATSIKSPSSVSIDSAKGLSIVTDPGWPTYQVGDLFWGKVFSYCFWPCMVCPDPLG 419
            .|...:...:.:...:|.:|..|.::|.|                              .||.||
 Frog  1353 IPISENKNVVQSGNTTPFNVGADDSQGSS------------------------------TPDTLG 1387

  Fly   420 QIVGNMPSHPQRSSLDN-ANVPIQVHVRFFADNGRRNWIKPENLLTFAGLKAFDDMREELRIKHG 483
            :         :..|||. |.|.||...|             :::.:|.|:    |...|      
 Frog  1388 K---------ESPSLDEPALVDIQATER-------------KSIYSFEGI----DQPSE------ 1420

  Fly   484 PKSAKYRQMVPKRTKVVIWRQAIEEAQAMTQIPYSDRLEKFYQT-----YENVVTLNRQKRKRTK 543
                                 |::|         ..:|:|..:|     .||.||...|:     
 Frog  1421 ---------------------AVDE---------ETKLDKEVETKSELHLENCVTEEIQR----- 1450

  Fly   544 YMMQDTSDVGSSLYDSTDNLHNKQGTQLLAVKRERSESPFSPAFSPVKSKNEKRAKRRKLSNGTE 608
                          |.|..|::|....:.|:....|:|..|.:.:.....::....|.:|     
 Frog  1451 --------------DPTQTLNSKHEDFIGAINDFYSDSEDSESDTEDTDSDDSSLPRNRL----- 1496

  Fly   609 ADTGSNSMAVTPSQTETTVDSSAYENPEFRQLLSAVMEYVMMNRSDEKVEKVLLSVVSNIWSLKQ 673
                 .|:.|.| |..|..:.....:|...|.||...|..:........|.|...||....|...
 Frog  1497 -----QSVVVIP-QNSTIANEELCRSPYESQTLSDSCETDVAESKSVSAEVVQKRVVDKECSPPA 1555

  Fly   674 IQLRELERDLASGEIEEPLGSSVVGRGSGVGTIKRLSNRLMTMMVRRSMTPVVTPSTTPAPSEPD 738
            ....|:..||.:..::|.:  |:..|..||              |..|...|:....:   .|..
 Frog  1556 KSSDEVLEDLRAKALKESV--SLPRRSVGV--------------VSTSQPEVIARIRS---GENH 1601

  Fly   739 RRLSEPPKTKKPVNRPIEEVIEDILQLDSKYLFRGLSREPICKYCYQAGSDLVRCSRTCSSWLHA 803
            .......:|....||                  .||.:|......|:...|        .|:.|:
 Frog  1602 TEYKAEHETPTSTNR------------------TGLQKENDKVELYKPSFD--------QSYQHS 1640

  Fly   804 DCLERKVTGAPMPKIGSRKALVIPPTSKSPSPD--------------EDHVTAD----AKEVVAV 850
                                    |::.:..||              .|...||    |:::..:
 Frog  1641 ------------------------PSNSAKKPDFFKERLHHEPPKRAGDFSRADGFQSAEDLSGL 1681

  Fly   851 GTSLVCHECNVGEPEGCVICHQVESPAVPSTPRKEDSSSHTPIEDKLLTCSQPMCGKRFHTSCCK 915
            |...                   ..|..||:..::..||:..::   ....|...|...:.....
 Frog  1682 GWDF-------------------SQPEKPSSTYQQPDSSYMYVD---YNYQQAFGGAHVYRKDGD 1724

  Fly   916 YW--------PQASSSKHSARCPRHVCHTCVSDDPSGKFQQLG-----------SSKLAKCVRCP 961
            ||        .|...||.....|..|.|....||     :..|           .|:||......
 Frog  1725 YWDPRAYEKGAQVMYSKPHGPAPDSVTHCYDEDD-----EDFGWDTDHGQTYPVQSELAYNESSS 1784

  Fly   962 ATYHQLSKCIPAGTQMLNTTNIICPRHNIAKADAHVNVLWCYICVKGGELVCCETCPIAVHAHCR 1026
            ...|::|.         |:|.::.                              ..|.|:...  
 Frog  1785 VQAHEISS---------NSTKMVV------------------------------VAPKAIPEQ-- 1808

  Fly  1027 NIPIKTNESYICEECESGRLPLYGEIVWAKFNNFRWWPAIILPPTEVPSNILKKAHGENDFVVRF 1091
              |.||::.  .:..|.|                        ||.:      ::...|||:    
 Frog  1809 --PAKTSDR--LDMKERG------------------------PPKK------RRQELENDY---- 1835

  Fly  1092 FGTHDHGWISRRRVYLYIEGDTGDGHKTKSQLFRNYTTGVEEASRFLPIIKARRQEQ---DMERQ 1153
              .:|...:.::             ||.::.|       .::.:.:|..:...|..|   |..||
 Frog  1836 --ENDLEALEKK-------------HKMEAAL-------KQDVASYLCNMDDFRDSQHWKDCSRQ 1878

  Fly  1154 SGNKLHPPPYVKIKTNKAVPPLRFSQNLEDLS--TCNCLPV--------DEHPCGPEAGCLNRML 1208
              .|: ||.:..|:.|..:...:.|::..|:.  .|.| ||        .:..||.:  ||||:|
 Frog  1879 --GKM-PPFFDLIEENVYLTERKKSKSHRDIKRMQCEC-PVLSKEERAQGQVACGED--CLNRLL 1937

  Fly  1209 FNECNPEYCKAGSLCENRMFEQRKSPRLEVVYMNERGFGLVNREPIAVGDFVIEYVGEVINHAEF 1273
            ..||:.. |..|..|.||.|::::...:|.:...::|:||...:.:....||:||.|||::|.||
 Frog  1938 MIECSSR-CPNGDYCSNRSFQKKQHAGVEAILTEKKGWGLRAAKDLKSNTFVLEYCGEVLDHKEF 2001

  Fly  1274 QRRMEQKQRDRDENYYFLGVEKDFIIDAGPKGNLARFMNHSCEPNCETQKWTVNCIHRVGIFAIK 1338
            :.|:::..|:::.:|||:.::.|.||||..|||.:|||||||:|||||||||||...|||.|..:
 Frog  2002 KSRVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCDPNCETQKWTVNGQVRVGFFTTR 2066

  Fly  1339 DIPVNSELTFNYLWDDLMNNSKKACFCGAKRCSGEIGGKLKDDAVKAHAKLKQMRRAKASAV 1400
            .:|..|||||:|.:......::| |:|||..|.|.:||:.:.....|..|:|:.|..|...|
 Frog  2067 VVPAGSELTFDYQFQRYGKEAQK-CYCGAPNCRGILGGENRVSVRAAGGKMKKERPRKKDTV 2127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NSDNP_733239.1 MSH6_like 391..508 CDD:99898 17/117 (15%)
PHD2_NSD 867..932 CDD:277040 13/72 (18%)
PHD3_NSD 933..988 CDD:277041 12/65 (18%)
PHD4_NSD 1001..1041 CDD:277042 5/39 (13%)
WHSC1_related 1047..1141 CDD:99899 10/93 (11%)
AWS 1183..1233 CDD:197795 20/59 (34%)
SET 1234..1354 CDD:214614 56/119 (47%)
setd2XP_012820433.2 MSCRAMM_ClfB <329..589 CDD:411414
ULP1 763..>1089 CDD:227489 12/67 (18%)
PspC_subgroup_2 <960..1138 CDD:411408 25/138 (18%)
AWS 1907..1961 CDD:197795 19/57 (33%)
SET_SETD2 1961..2102 CDD:380949 63/141 (45%)
WW 2823..2852 CDD:395320
SRI 2900..2988 CDD:400510
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D507784at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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