DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NSD and nsd1

DIOPT Version :9

Sequence 1:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster
Sequence 2:XP_002936997.3 Gene:nsd1 / 100145675 XenbaseID:XB-GENE-989206 Length:2440 Species:Xenopus tropicalis


Alignment Length:1560 Identity:398/1560 - (25%)
Similarity:622/1560 - (39%) Gaps:429/1560 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 EESELESQRQTPVQKQQQQRVSMVNRKRDLINLQSALSPKYIGYANANSPTPLSDSDDTIRTTRR 146
            |..:.:.:.:..|...|::|.:...:||..:.:.|.||                      |:::|
 Frog   602 EAKQKDFRLKQSVSSVQKERSAGTTKKRKRLRIHSELS----------------------RSSKR 644

  Fly   147 RVNQAAALNNSSAGE-----TLAHDNASPRTPGGGGGGGGDDSANQLLSKTYMSP----IEKLLI 202
            .|  |::|::|:..|     :|:.|..:...|.|.|.....:..:..|:...:|.    :...|:
 Frog   645 LV--ASSLDSSTNVESSNEFSLSKDWVTEDVPDGNGHSVDKNKYSPSLTNVSLSDSCENLHNSLL 707

  Fly   203 KNGASSPNSTGFEAGSEDLGIRPIVRKHVKRKMKRVPKAKVTLELDEKNQQEVDEKSVKTEPIDE 267
            ::.|.||:                     :..:|..|||   |..:.||                
 Frog   708 ESNAPSPS---------------------QHSIKDFPKA---LTPESKN---------------- 732

  Fly   268 EVDRTDEAPTQEAQTTAISIKSETEAEHKAAVDVHIKQEDTIRLDIVNNPVESTSIVITEEPKDL 332
              ....::.||.:|:..|   .:::..||.|                     ..|:..|..|:.:
 Frog   733 --CLVHDSATQNSQSKNI---LDSKLGHKPA---------------------KASLGKTGRPEAM 771

  Fly   333 -------EKSTEELAFALPLASSTEVDLKSPPDLSSTALA-----TSIKSPSS-VSIDSAKGLSI 384
                   |||.:.:.....|.:|....||   :|||.:|:     :::..||: :...||.|.:.
 Frog   772 NLLSNMHEKSCDSMKNETKLVNSVISGLK---ELSSRSLSEDGAESTVSKPSTPLLFASAPGQNR 833

  Fly   385 VTDPGWPTYQVGDLFW------------------GKVFSYCFWPCM--------VCPDPLGQIVG 423
            :  |..|.|:..:|..                  ....|.|..||.        :.|| :|.|.|
 Frog   834 I--PLEPDYKFSNLLMMLKDMHDTKTKERKLMTGQNTVSSCSDPCEDSIKGSPDIVPD-VGGISG 895

  Fly   424 NMPSHPQRSSLDNANVPIQVHVRFFADNGRRNWIKPENLLTFAGLKAFDDMREELRIKHGPKSAK 488
            |   |...:.:.....|         :|..:.....:|.:...            |.....|::.
 Frog   896 N---HTHSNEVGMVKEP---------NNESKLGATGQNKIVCN------------RKSSSKKNSN 936

  Fly   489 YRQ---MVPKRTKVVIWRQAIEEAQAMTQIPYSDRLEKFYQTYENVVTLNRQKRKRTKYMMQDTS 550
            :::   |.||  ||..:::::..||.:.  ..|:..|....:|...|.|:.:...::.....:.|
 Frog   937 FQKKPPMEPK--KVSKYKKSMISAQNVN--ASSECTELTTNSYNTSVQLHGECPSKSITHPYNCS 997

  Fly   551 DVG----------------------SSLY---------------DSTDNLHNKQGTQLLAVKRER 578
            :||                      |..|               :|:.||.||..|:....|:|:
 Frog   998 EVGAGYPEETGPGSEQSSECSQWNESQKYVAPKKRWQKIKHNGPESSTNLLNKASTKSSLCKKEQ 1062

  Fly   579 S-----------ESPF-SPAFSPVKSKNE---------KRAKRRK-------------------- 602
            .           |..| .|..|.:.::.|         |:.|:||                    
 Frog  1063 DVLEVPKQLQDHEVTFGEPELSSIAAQPEAPKRGSNFGKKYKKRKRFTRRSGDHVKTSTPKINKQ 1127

  Fly   603 ----LSNGTEADTGSNSMAVTPS-QTETTVDSSAYENPEFRQLLSAVMEYVMMNRSDEKVEKVLL 662
                :|...|.:...|...:.|: ...:.::|.|..:.:|.:|..|   |....::.:..||   
 Frog  1128 KKLGVSLQLEVNKQKNLKLILPAVDFLSEINSKATSSSQFSKLAEA---YSTETKNPDNEEK--- 1186

  Fly   663 SVVSNIWSLKQIQLRELERDLASGEIEEPLGSSVVGRGSGVGTIKRLSNRLMTMMVRR------- 720
               |:....:...|...|:.|:.| ..||  ||:..: |.|..::  .||..:.::.|       
 Frog  1187 ---SDSSEKEDHGLASPEQSLSDG-FSEP--SSITAQ-SQVNPVR--ENRRKSKLIPRVCEFDDL 1242

  Fly   721 ----------SMTPVVTPSTTPAPSE----------PDRRLSEPPKTKKPV-------------- 751
                      |..|.....||.....          ..|||.|..:.:|.:              
 Frog  1243 DEQLGLLEEDSKPPAKIAKTTSFKQNVLKQSFRYRAASRRLPENRRRRKRIRLAGKFKKKRNLIS 1307

  Fly   752 ---NRPIEEVIEDILQLDSKYLFRGLS----------------------REPICKYCYQAGSDLV 791
               :.|.||..|:.:...|.....||.                      :|.:|:.|.:.| :|:
 Frog  1308 RQSSYPGEEPHENGVASHSDTAEEGLEHELTGASLKRNQGERSGGGAAMKENVCQVCEKPG-ELL 1371

  Fly   792 RCSRTCSSWLHADCLERKVTGAPMPKIGSRKALVIPPTSKSPSPDEDHVTADAKEVVAVGTSLVC 856
            .|...|....|..||..:.    ||:                                  ...||
 Frog  1372 LCEAQCCGAFHLQCLGMEA----MPQ----------------------------------GKFVC 1398

  Fly   857 HECNVGEPEG---CVICHQVESPAVPSTPRKEDSSSHTPIEDKLLTCSQPMCGKRFHTSCCKYWP 918
            .||:.|..:|   |.:|             ||.       :..:..|..|:|||.:|..|...:|
 Frog  1399 TECSSGTLQGYHTCFVC-------------KES-------DQGVKRCMLPLCGKYYHEECALKYP 1443

  Fly   919 QASSSKHSARCPRHVCHTCVSDDPSGKFQQLGSSKLAKCVRCPATYHQLSKCIPAGTQMLNTTNI 983
            .|:......||..|:|.||.:.:||......|  :|.:|||||..||....|:|||...|.:.:|
 Frog  1444 PATQQNRGFRCSLHICSTCYATNPSNPSASKG--RLMRCVRCPVAYHANDFCLPAGAVTLASNSI 1506

  Fly   984 ICPRH----NIAKADAHVNVLWCYICVKGGELVCCETCPIAVHAHCRNIPIKTNESYICEECESG 1044
            |||.|    ...|...||||.||::|.:||.|:|||:||.|.|..|.||.:... |:.|.:|::|
 Frog  1507 ICPNHFTPRRGCKNHEHVNVSWCFVCSEGGSLLCCESCPAAFHRECLNIDMPEG-SWFCNDCKAG 1570

  Fly  1045 RLPLYGEIVWAKFNNFRWWPAIILPPTEVPSNILKKAHGENDFVVRFFGTHDHGWISRRRVYLYI 1109
            :.|.|.|:||.|...:|||||.:..|..:|.||.|..|...:|.|.|||:.|:.|..:.||:.|:
 Frog  1571 KKPHYKEVVWVKVGRYRWWPAEVCHPKTIPPNIQKMKHDIGEFPVVFFGSKDYLWTHQARVFPYM 1635

  Fly  1110 EGDTGDGHKTKSQLFRNYTTGVEEASRFLPIIKARRQEQDMERQSGNKLHPPPYVKIKTNKAVPP 1174
            |||..:..|....:...|..|:.||:.....:||:::.:.::....|...||||..||.|:.|..
 Frog  1636 EGDALNKDKMSKGMDAVYKKGLMEAAERFEELKAQKEMRQLQEDKKNDKKPPPYKHIKVNRPVGK 1700

  Fly  1175 LR-FSQNLEDLSTCNCLPVDEHPCGPEAGCLNRMLFNECNPEYCKAGSLCENRMFEQRKSPRLEV 1238
            :: .:.:|.::..|||...||:|||.::.|:||||..||:|..|.||..|:|:.|.:|:.|.:|:
 Frog  1701 VQILTADLSEIPRCNCKATDENPCGQDSECINRMLLYECHPSVCPAGERCQNQAFSKRQYPEVEI 1765

  Fly  1239 VYMNERGFGLVNREPIAVGDFVIEYVGEVINHAEFQRRMEQKQRDRDENYYFLGVEKDFIIDAGP 1303
            .....||:||..|..|..|:||.|||||:|:..|.:.|:...|.....|:|.|.::||.:|||||
 Frog  1766 FRTLSRGWGLRCRTDIKKGEFVNEYVGEMIDEEECRARIRYAQEQDITNFYMLTLDKDRVIDAGP 1830

  Fly  1304 KGNLARFMNHSCEPNCETQKWTVNCIHRVGIFAIKDIPVNSELTFNYLWDDLMNNSKKACFCGAK 1368
            |||.||||||.|:|||||||||||...|||:||:.||....||||||.. :.:.|.|..|.|||.
 Frog  1831 KGNFARFMNHCCQPNCETQKWTVNGDTRVGLFALCDIKAGVELTFNYNL-ECLGNGKTVCKCGAP 1894

  Fly  1369 RCSGEIGGKLKDDAVKAHAKLKQ----MRRAKASAVRIH-------------VKPKK--TPKVKH 1414
            .|||.:|.:.|:..|.:..|.|:    ::|.|:..|:.|             |..||  .|||.|
 Frog  1895 NCSGFLGVRPKNQPVSSEDKGKKRKQYVKRKKSEVVKEHEDECFSCGDGGQLVSCKKPGCPKVYH 1959

  Fly  1415  1414
             Frog  1960  1959

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NSDNP_733239.1 MSH6_like 391..508 CDD:99898 24/145 (17%)
PHD2_NSD 867..932 CDD:277040 15/64 (23%)
PHD3_NSD 933..988 CDD:277041 23/54 (43%)
PHD4_NSD 1001..1041 CDD:277042 18/39 (46%)
WHSC1_related 1047..1141 CDD:99899 35/93 (38%)
AWS 1183..1233 CDD:197795 23/49 (47%)
SET 1234..1354 CDD:214614 64/119 (54%)
nsd1XP_002936997.3 PWWP 316..421 CDD:413370
PHD1_NSD1_2 1360..1402 CDD:277118 14/80 (18%)
PHD2_NSD1 1411..1457 CDD:277120 15/65 (23%)
PHD3_NSD1 1458..1511 CDD:277123 23/54 (43%)
PHD4_NSD1 1528..1567 CDD:277126 18/39 (46%)
WHSC1_related 1573..1667 CDD:99899 35/93 (38%)
AWS 1720..1758 CDD:407759 19/37 (51%)
SET_NSD1 1760..1901 CDD:380987 73/141 (52%)
PHD5_NSD1 1936..1978 CDD:277129 7/24 (29%)
C5HCH 1977..2026 CDD:407828
PTZ00449 <2209..>2434 CDD:185628
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 132 1.000 Domainoid score I5061
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 495 1.000 Inparanoid score I1354
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D38976at33208
OrthoFinder 1 1.000 - - FOG0001511
OrthoInspector 1 1.000 - - otm47573
Panther 1 1.100 - - O PTHR22884
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X847
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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