DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL4 and RPL4A

DIOPT Version :9

Sequence 1:NP_524538.2 Gene:RpL4 / 43349 FlyBaseID:FBgn0003279 Length:401 Species:Drosophila melanogaster
Sequence 2:NP_009587.1 Gene:RPL4A / 852319 SGDID:S000000235 Length:362 Species:Saccharomyces cerevisiae


Alignment Length:398 Identity:196/398 - (49%)
Similarity:263/398 - (66%) Gaps:50/398 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESW 70
            :||.|:|::...| |....:.|||||.||||||:|:.|...:.:|.||||||||.||||||||||
Yeast     2 SRPQVTVHSLTGE-ATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESW 65

  Fly    71 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASG 135
            ||||||||||||.||||.||||||||||||||||||||||:|:|:.|||.|::|||..|||||:.
Yeast    66 GTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATA 130

  Fly   136 VPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMR 200
            |.:||.::||.::.:.|.|||||.:::.:||||:||..|:.:...:|:.||.||::.|||:|..|
Yeast   131 VASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYR 195

  Fly   201 DRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLND 265
            :||...||||||||.:|.|:.||.||:||:||.||..||||:||||.|:||||||||:||.:|:.
Yeast   196 NRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIWTEAAFTKLDQ 260

  Fly   266 LFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRD----PRKRVFRSVRRLNPLTNVR 326
            ::|: :..::.|.||.||...::.:|::|::.|.||:..:|.    .:||.  .|.:.|||.|.:
Yeast   261 VWGS-ETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIRPAGQATQKRT--HVLKKNPLKNKQ 322

  Fly   327 QLIKLNPYAEVLKRRAALAAEKRTVAKVLAKAKKQNVELAKSHFANVATKAAANRAKLLAARKKK 391
            .|::|||||:|      .||||                                    |.::|.:
Yeast   323 VLLRLNPYAKV------FAAEK------------------------------------LGSKKAE 345

  Fly   392 VAAKKPAA 399
            ....||||
Yeast   346 KTGTKPAA 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL4NP_524538.2 PTZ00428 6..383 CDD:185611 190/380 (50%)
Ribosomal_L4 10..268 CDD:294231 158/257 (61%)
Ribos_L4_asso_C 278..350 CDD:291072 28/75 (37%)
RPL4ANP_009587.1 PTZ00428 2..350 CDD:185611 192/393 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344134
Domainoid 1 1.000 317 1.000 Domainoid score I188
eggNOG 1 0.900 - - E1_COG0088
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H748
Inparanoid 1 1.050 359 1.000 Inparanoid score I383
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53550
OrthoFinder 1 1.000 - - FOG0003183
OrthoInspector 1 1.000 - - otm46733
orthoMCL 1 0.900 - - OOG6_100849
Panther 1 1.100 - - LDO PTHR19431
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1140
SonicParanoid 1 1.000 - - X2143
TreeFam 1 0.960 - -
1514.790

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