DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment RpL4 and AT3G09630

DIOPT Version :9

Sequence 1:	NP_524538.2	Gene:	RpL4 / 43349	FlyBaseID:	FBgn0003279	Length:	401	Species:	Drosophila melanogaster
Sequence 2:	NP_187574.1	Gene:	AT3G09630 / 820120	AraportID:	AT3G09630	Length:	406	Species:	Arabidopsis thaliana

Alignment Length:	402	Identity:	208/402 - (51%)
Similarity:	279/402 - (69%)	Gaps:	34/402 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MSLGNARPLVSVYTEKNEPAKDKN--ICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGH 63
            |:...|||||::.|...:.:.|::  :.||.|..||:|||:||.||..:..|:||.||||:.|||
plant     1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGH 65

  Fly    64 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALV 128
            |||||||||||||:|||||.||||||:||.||||||||||||||||.:|||||:||||.:|:|:|
plant    66 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIV 130

  Fly   129 SAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFR 193
            |||||:.|||||.::||.|:.|.|.||||||..:.|:||..|:..|:::..:.|.:|...|...|
plant   131 SAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIR 195

  Fly   194 AGRGTMRDRRRIARRGPLVVYDKDEGLR--KAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWT 256
            .|:|.||:||.|:|:||||||. .||.:  |||||:||:|..:|::|||||||||||:|||||||
plant   196 PGKGKMRNRRYISRKGPLVVYG-TEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWT 259

  Fly   257 ESAFARLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNP 321
            :|||.:|..::|:::|||..||||.||:.||.|.||:|::.|:||:.|:...:|...|:|.:.||
plant   260 KSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNP 324

  Fly   322 LTNVRQLIKLNPYAEVLKRRAALAAEKRTVAKVLAKAKKQNVELAKSHFANVATKAAANRAKLLA 386
            |.|:..::||||||:..||.:.||..:|      .||||:.:
plant   325 LKNLNVMLKLNPYAKTAKRMSLLAEAQR------VKAKKEKL----------------------- 360

  Fly   387 ARKKKVAAKKPA 398
            |:|:|...|:.|
plant   361 AKKRKTVTKEEA 372

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
RpL4	NP_524538.2	PTZ00428	6..383	CDD:185611	202/380 (53%)
		Ribosomal_L4	10..268	CDD:294231	156/261 (60%)
		Ribos_L4_asso_C	278..350	CDD:291072	32/71 (45%)
AT3G09630	NP_187574.1	PLN00185	2..406	CDD:177779	207/401 (52%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	312	1.000	Domainoid score	I307
eggNOG	1	0.900	-	-		E1_COG0088
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H748
Inparanoid	1	1.050	404	1.000	Inparanoid score	I461
OMA	1	1.010	-	-		QHG53550
OrthoDB	1	1.010	-	-		D878848at2759
OrthoFinder	1	1.000	-	-		FOG0003183
OrthoInspector	1	1.000	-	-		otm3484
orthoMCL	1	0.900	-	-		OOG6_100849
Panther	1	1.100	-	-	LDO	PTHR19431
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X2143
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	15	14.840