DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL4 and rps16

DIOPT Version :9

Sequence 1:NP_524538.2 Gene:RpL4 / 43349 FlyBaseID:FBgn0003279 Length:401 Species:Drosophila melanogaster
Sequence 2:NP_001070200.1 Gene:rps16 / 767765 ZFINID:ZDB-GENE-050506-107 Length:146 Species:Danio rerio


Alignment Length:99 Identity:27/99 - (27%)
Similarity:43/99 - (43%) Gaps:18/99 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   309 RKRVFRSV---RRLNPL--TNVRQLIKLNPYA---EVLKRRAALAAEKRTVAKVLAKAKKQNVEL 365
            ||:...:|   :|.|.|  .|.|.|..:.|..   ::|:....|..|:.....:..:.|      
Zfish    15 RKKTATAVAHCKRGNGLIKVNGRPLEMIEPVTLQYKLLEPLLLLGKERFAGVDIRVRVK------ 73

  Fly   366 AKSHFANV-ATKAAANRAKLLAARKKKV--AAKK 396
            ...|.|.| |.:.|.::| |:|..:|.|  |:||
Zfish    74 GGGHVAQVYAIRQAISKA-LVAYYQKYVDEASKK 106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL4NP_524538.2 PTZ00428 6..383 CDD:185611 19/82 (23%)
Ribosomal_L4 10..268 CDD:294231
Ribos_L4_asso_C 278..350 CDD:291072 13/48 (27%)
rps16NP_001070200.1 PLN00210 6..146 CDD:177799 27/99 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0088
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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