DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL4 and RPL4

DIOPT Version :9

Sequence 1:NP_524538.2 Gene:RpL4 / 43349 FlyBaseID:FBgn0003279 Length:401 Species:Drosophila melanogaster
Sequence 2:NP_000959.2 Gene:RPL4 / 6124 HGNCID:10353 Length:427 Species:Homo sapiens


Alignment Length:426 Identity:258/426 - (60%)
Similarity:311/426 - (73%) Gaps:42/426 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESW 70
            ||||:|||:||.| :..||:.||||||||||||:||.||..||:||||.||||||||||||||||
Human     4 ARPLISVYSEKGE-SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

  Fly    71 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASG 135
            ||||||||||||||||||||||||||||||||||||||||:|||||:||..|:|||:.||:|||.
Human    68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASA 132

  Fly   136 VPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMR 200
            :||||.||||.|:.|.|.||||.|:|:..:|||:||:.|::||.|.||:|||.|||.|||:|.||
Human   133 LPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMR 197

  Fly   201 DRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLND 265
            :||||.||||.::|::|.|:.|||||||||..:||.|||:||||||||||||.|||||||.:|::
Human   198 NRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDE 262

  Fly   266 LFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIK 330
            |:|||:|.::||..||||..||.||||||:|||.||::.||.|||::.|.|.:.|||.|:|.::|
Human   263 LYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLK 327

  Fly   331 LNPYAEVLKR------------------------------RAALAAEKRTVAKVLAKAKKQNVEL 365
            |||||:.::|                              :||:|.:|..|.|   |.||..|.:
Human   328 LNPYAKTMRRNTILRQARNHKLRVDKAAAAAAALQAKSDEKAAVAGKKPVVGK---KGKKAAVGV 389

  Fly   366 AKSHFANVATKAAANRAKLLAARKKKVAAKKPAAKK 401
            .|.....|..||||.        ||....||||.||
Human   390 KKQKKPLVGKKAAAT--------KKPAPEKKPAEKK 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL4NP_524538.2 PTZ00428 6..383 CDD:185611 250/406 (62%)
Ribosomal_L4 10..268 CDD:294231 188/257 (73%)
Ribos_L4_asso_C 278..350 CDD:291072 40/101 (40%)
RPL4NP_000959.2 PTZ00428 2..372 CDD:185611 236/368 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 369..427 24/60 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165148023
Domainoid 1 1.000 376 1.000 Domainoid score I870
eggNOG 1 0.900 - - E1_COG0088
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H748
Inparanoid 1 1.050 498 1.000 Inparanoid score I1386
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53550
OrthoDB 1 1.010 - - D438133at33208
OrthoFinder 1 1.000 - - FOG0003183
OrthoInspector 1 1.000 - - oto89472
orthoMCL 1 0.900 - - OOG6_100849
Panther 1 1.100 - - LDO PTHR19431
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1140
SonicParanoid 1 1.000 - - X2143
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1716.800

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