DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpL4 and mrpl4

DIOPT Version :9

Sequence 1:NP_524538.2 Gene:RpL4 / 43349 FlyBaseID:FBgn0003279 Length:401 Species:Drosophila melanogaster
Sequence 2:NP_001018572.1 Gene:mrpl4 / 553771 ZFINID:ZDB-GENE-050522-388 Length:302 Species:Danio rerio


Alignment Length:221 Identity:49/221 - (22%)
Similarity:76/221 - (34%) Gaps:90/221 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 PAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGG-----T 87
            |.||..|||.|:::.|....|...|.:|     |..:|.||             |||||     .
Zfish    93 PDVFSVPIRLDILHAVEVWQRNFKRISY-----ANVKTRAE-------------VRGGGRKPWQQ 139

  Fly    88 HRSGQGAFGN----MCRGGRMF----APTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKG 144
            .|:|:...|:    :.|||.:.    .||..:.....||.|...:.||.:.:|        |...
Zfish   140 KRTGRARHGSIRSPLWRGGGIIHGPRGPTSYYYMLPMKVRVQGLKIALSAKLA--------QDYL 196

  Fly   145 HVIDGV-----------------------------SEFP---LVVSDEVQKVQ------------ 165
            |::|.:                             .|||   |..:::::.|.            
Zfish   197 HIVDSLEIPTPDPQYLQDLVKHRQWGDSVLIVDVGEEFPQNILKATEDLKTVNIIPALGLNVHSL 261

  Fly   166 -------KTKQAVIFLRRLKIWADIQ 184
                   .|.:||.||.:..:|.|::
Zfish   262 LKHESLVLTLEAVKFLEKKLLWHDVR 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL4NP_524538.2 PTZ00428 6..383 CDD:185611 49/221 (22%)
Ribosomal_L4 10..268 CDD:294231 49/221 (22%)
Ribos_L4_asso_C 278..350 CDD:291072
mrpl4NP_001018572.1 Ribosomal_L4 89..280 CDD:278970 47/212 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0088
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.