DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL4 and rpl401

DIOPT Version :9

Sequence 1:NP_524538.2 Gene:RpL4 / 43349 FlyBaseID:FBgn0003279 Length:401 Species:Drosophila melanogaster
Sequence 2:NP_595879.1 Gene:rpl401 / 2539780 PomBaseID:SPBC1711.06 Length:363 Species:Schizosaccharomyces pombe


Alignment Length:346 Identity:198/346 - (57%)
Similarity:262/346 - (75%) Gaps:5/346 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESW 70
            |||.||:| .|:.....:.:.||.|||||||||:|..||..:.:|.||.|||||.||||||||||
pombe     4 ARPTVSIY-NKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67

  Fly    71 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASG 135
            |||||:||||||.|||||||||.|||||||.|||||||||:|:||.|||.|::|||:.||:||||
pombe    68 GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASG 132

  Fly   136 VPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMR 200
            ||:|:.::||.|:.:.|.||||.|.||..||||:||..|:.:|.:.|:.||..|::.|||:|.:|
pombe   133 VPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLR 197

  Fly   201 DRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLND 265
            :||.:.|||||||:::|.|:.||||||||:|.:||.:||||:||||||:|||||||:|||..|:.
pombe   198 NRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDS 262

  Fly   266 LFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLR--DPRKRVFRS-VRRLNPLTNVRQ 327
            :||:..:.:.|||.|.||:..::|.|::||:.|:||:.:::  .| .||.|: |::.|||.|...
pombe   263 VFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGP-SRVKRAHVQKKNPLKNKAV 326

  Fly   328 LIKLNPYAEVLKRRAALAAEK 348
            |.:|||||:..|....:.:||
pombe   327 LSRLNPYAKAYKANVKINSEK 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL4NP_524538.2 PTZ00428 6..383 CDD:185611 198/346 (57%)
Ribosomal_L4 10..268 CDD:294231 162/257 (63%)
Ribos_L4_asso_C 278..350 CDD:291072 29/74 (39%)
rpl401NP_595879.1 PTZ00428 2..347 CDD:185611 196/344 (57%)
Ribosomal_L4 8..265 CDD:294231 162/257 (63%)
Ribos_L4_asso_C 275..351 CDD:291072 29/74 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 334 1.000 Domainoid score I200
eggNOG 1 0.900 - - E1_COG0088
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H748
Inparanoid 1 1.050 398 1.000 Inparanoid score I385
OMA 1 1.010 - - QHG53550
OrthoFinder 1 1.000 - - FOG0003183
OrthoInspector 1 1.000 - - otm47186
orthoMCL 1 0.900 - - OOG6_100849
Panther 1 1.100 - - LDO PTHR19431
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1140
SonicParanoid 1 1.000 - - X2143
TreeFam 1 0.960 - -
1413.860

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