DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment CG5003 and SKP2A

DIOPT Version :9

Sequence 1:	NP_651593.1	Gene:	CG5003 / 43344	FlyBaseID:	FBgn0039554	Length:	713	Species:	Drosophila melanogaster
Sequence 2:	NP_001321134.1	Gene:	SKP2A / 838740	AraportID:	AT1G21410	Length:	360	Species:	Arabidopsis thaliana

Alignment Length:	157	Identity:	30/157 - (19%)
Similarity:	55/157 - (35%)	Gaps:	61/157 - (38%)

- Green bases have known domain annotations that are detailed below.

  Fly   594 PDVVWIRNINRSPD----------------NKLERLSLRNYHLITNHTLEHLVQCSPNLVYIDVS 642
            |..|.::.:|...|                ::|:.|.|.....||:.:|..|....|:|..:::|
plant    87 PKFVKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKSLKITDRSLYALAHGCPDLTKLNLS 151

  Fly   643 G-TSITLPAI-------RRFK----------ISKPKCEVVANHLEEFERL--------------- 674
            | ||.:..||       |:.|          ::....|.:.|:..:.:.|
plant   152 GCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMS 216

  Fly   675 -----PELETQE-------EDDTVVVM 689
                 |:|.|.:       .|::||.:
plant   217 LAYGCPDLRTLDLCGCVLITDESVVAL 243

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG5003	NP_651593.1	F-box	68..114	CDD:279040
CG5003	NP_651593.1	leucine-rich repeat	610..635	CDD:275381	7/24 (29%)
SKP2A	NP_001321134.1	F-box-like	28..>63	CDD:403981
		leucine-rich repeat	66..91	CDD:275381	1/3 (33%)
		leucine-rich repeat	92..118	CDD:275381	2/25 (8%)
		AMN1	<115..264	CDD:187754	26/129 (20%)
		leucine-rich repeat	119..144	CDD:275381	7/24 (29%)
		leucine-rich repeat	145..170	CDD:275381	7/24 (29%)
		leucine-rich repeat	171..197	CDD:275381	3/25 (12%)
		leucine-rich repeat	198..223	CDD:275381	1/24 (4%)
		leucine-rich repeat	224..249	CDD:275381	5/20 (25%)
		leucine-rich repeat	250..272	CDD:275381
		leucine-rich repeat	294..313	CDD:275381
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1046098at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920