DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5003 and CG12402

DIOPT Version :10

Sequence 1:NP_651593.1 Gene:CG5003 / 43344 FlyBaseID:FBgn0039554 Length:713 Species:Drosophila melanogaster
Sequence 2:NP_001303481.1 Gene:CG12402 / 41714 FlyBaseID:FBgn0038202 Length:671 Species:Drosophila melanogaster


Alignment Length:402 Identity:93/402 - (23%)
Similarity:148/402 - (36%) Gaps:116/402 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 ESLDRETECNLMDF-CDELLFE-------IFQYLDTSSILAVMHCSPRF----ENLLLDHRFYH- 110
            :.||.:...:|:.| ||.:..:       :.|...|.:.:.:.|....|    ||.|||....| 
  Fly   209 DDLDMKQFSHLVGFECDGVSLDAVLKMRMLLQLRRTENKVQLRHLQFEFRRNNENALLDVLQDHA 273

  Fly   111 ------HIDLSNGPLPMGILEEILGRATEKTH---TIKICG--------------PPSSQ----- 147
                  ::..|..|   ||......||.|..|   |:|:.|              |.|:.     
  Fly   274 ETLVCVNLFFSCSP---GIDTREWCRAFENMHNLRTLKLSGNCHLVLLEAVLRAVPESAPIRQLD 335

  Fly   148 -------------HVAGEFRQFTQTLSSVFPRVVQLKVLELEGVSLDFEYIHITEFPATLRRLKL 199
                         :|||:::...:.|..:|  .|||....::.         :.:....|..|.:
  Fly   336 LTGMLSLTNELLLYVAGKWQSTLKVLDLMF--CVQLNANCIDA---------LRQLSGRLEALTM 389

  Fly   200 KDCSVRVG-----DTPKSIFYSI-ELHLLDLEDLSIEDNSWFEPYYIMGLSKLPSLRRLSLKGCQ 258
            ..|....|     .....|.||: ||||  .|.:.::::|..:.     |.:||:||||||..|:
  Fly   390 AYCRELTGTGLLQGLAGDINYSLQELHL--EETIFLDESSMCQL-----LERLPNLRRLSLDNCR 447

  Fly   259 ALCKFVPYGSMAARFGFQ-KLESLDLRQ-TPINNSDLQCF-------SAIENLKELLLES-PQIL 313
               :.|...:||....:| :|.:|::.. ..|.:..|..:       |.:..||||.|.. ..:.
  Fly   448 ---QAVTDRTMATICQYQTRLRNLNIEYCMKITDQGLMGYGDTPYPISRLRGLKELNLRGCRNVT 509

  Fly   314 HSKQAVAKK------------NTNGNATDEAASPQPDSLKVLS-------DDEPSTSRAAMEHLR 359
            .|...|..|            |...:...||.:....||:.|.       |||  |....:.:|:
  Fly   510 DSSLMVGLKLPELRALSLGYCNRLTSEGFEALTQNCPSLEALCVSSCMAVDDE--TVLNIVSNLK 572

  Fly   360 ACKVAFNLDNCS 371
            ..:| .||.||:
  Fly   573 RLRV-LNLSNCT 583

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5003NP_651593.1 F-box 69..111 CDD:425796 14/60 (23%)
leucine-rich repeat 610..635 CDD:275381
CG12402NP_001303481.1 F-box 75..117 CDD:425796
leucine-rich repeat 281..303 CDD:275381 7/24 (29%)
PPP1R42 <297..482 CDD:455733 46/205 (22%)
leucine-rich repeat 304..330 CDD:275381 5/25 (20%)
leucine-rich repeat 331..357 CDD:275381 3/25 (12%)
leucine-rich repeat 358..379 CDD:275381 5/31 (16%)
leucine-rich repeat 384..409 CDD:275381 4/24 (17%)
leucine-rich repeat 412..437 CDD:275381 8/31 (26%)
AMN1 430..595 CDD:187754 43/165 (26%)
leucine-rich repeat 438..464 CDD:275381 11/28 (39%)
leucine-rich repeat 465..496 CDD:275381 5/30 (17%)
leucine-rich repeat 497..521 CDD:275381 8/23 (35%)
leucine-rich repeat 522..547 CDD:275381 3/24 (13%)
leucine-rich repeat 548..573 CDD:275381 7/26 (27%)
leucine-rich repeat 574..599 CDD:275381 5/11 (45%)
Blue background indicates that the domain is not in the aligned region.

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