DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5003 and Fbxl22

DIOPT Version :10

Sequence 1:NP_651593.1 Gene:CG5003 / 43344 FlyBaseID:FBgn0039554 Length:713 Species:Drosophila melanogaster
Sequence 2:NP_001102239.1 Gene:Fbxl22 / 363083 RGDID:1311830 Length:236 Species:Rattus norvegicus


Alignment Length:154 Identity:32/154 - (20%)
Similarity:52/154 - (33%) Gaps:46/154 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   598 WIRN-INRSPDNKLERLSLRNYHLITNHTLEHLVQCSPNLVYIDVSGTS-ITLPAIRRFKISKPK 660
            |::: ..||       :..::.:|:.:..|:...:| |||..:.:||.. :|...:.|..:..|:
  Rat    85 WLKSAFQRS-------ICSQHENLVNDFLLQVCNRC-PNLASVTLSGCGHVTDDCLARLLLGCPR 141

  Fly   661 --------CEVVANH-----------LEEFE-------------RL----PELETQEEDDTVVVM 689
                    |..|.|.           |:.|.             ||    |.|....|....::.
  Rat   142 LRALRLENCARVTNRTLAAVAAHGRALQTFHVDFCRNVSAAGLLRLRAACPNLILSAEHSAAMIP 206

  Fly   690 LQPPPRADDEQPPKSPPPQEVVAP 713
            .|||..........||.|....||
  Rat   207 DQPPRARASPASVFSPAPGRQSAP 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5003NP_651593.1 F-box 69..111 CDD:425796
leucine-rich repeat 610..635 CDD:275381 3/24 (13%)
Fbxl22NP_001102239.1 F-box_FBXL22 3..45 CDD:438901
AMN1 44..>191 CDD:187754 21/113 (19%)
leucine-rich repeat 116..141 CDD:275381 5/24 (21%)
leucine-rich repeat 142..167 CDD:275381 3/24 (13%)
leucine-rich repeat 168..193 CDD:275381 4/24 (17%)
Blue background indicates that the domain is not in the aligned region.

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