DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5003 and Fbxl19

DIOPT Version :10

Sequence 1:NP_651593.1 Gene:CG5003 / 43344 FlyBaseID:FBgn0039554 Length:713 Species:Drosophila melanogaster
Sequence 2:XP_006230338.1 Gene:Fbxl19 / 308999 RGDID:1310989 Length:739 Species:Rattus norvegicus


Alignment Length:447 Identity:93/447 - (20%)
Similarity:148/447 - (33%) Gaps:132/447 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   310 PQILHSKQAVAKKNTNGNATDEAASPQPD--SLKVLSDDEPSTSRAAMEHL-RACKVAFNLDNCS 371
            |::|:..||.:..:. |...:....|:|.  |.:..:...||..|..:|.. |.|::   |:...
  Rat   306 PRVLNPSQAFSSCHP-GLPPENWEKPKPPIASAEGPAVPSPSPQREKLERFKRMCQL---LERVP 366

  Fly   372 DRKEEKSPVPTEPPSEGQDLQAKRIRAPSESDDEDTSSTSGSSSDKLEVLSLPRNGHSNAAPLSG 436
            |.....|...::..|.|..|...  .||.|:.: ......|||.:|..     |.|.....|.||
  Rat   367 DTSSSSSDSDSDSDSSGTSLSED--EAPGEARN-GRRPARGSSGEKEN-----RGGRRAIRPGSG 423

  Fly   437 GVDLP-PLPHAADAANAADAPIAVDAANIEAPGQSPGLDPRPPRAYIYVPDAENANPRQQRSVVA 500
            |..|. ||                          .|...||||:...:|   ....||.......
  Rat   424 GPLLSWPL--------------------------GPAPPPRPPQLERHV---VRPPPRSPEPDTL 459

  Fly   501 VFAQGTEQ-----RYIYVNQQFSLPMNVLMPTRRHRTHPRPNYDQVVQHPMFWNMLEPLDRDYAR 560
            ..|.|::.     .::.|.|... |..:.:..|..||..|..||:     ..|..:     |.:|
  Rat   460 PLAAGSDHPLPRAAWLRVFQHLG-PRELCVCMRVCRTWSRWCYDK-----RLWPRM-----DLSR 513

  Fly   561 RVRPRPPS----CQTTPQ--------------YYVTDR---------------AMYSFGRADRPV 592
            |....||.    .:..|:              .::.:|               ::.:.|.|..|.
  Rat   514 RKSLTPPMLSGVVRRQPRALDLSWTGVSKKQLMWLLNRLQGLQELVLSGCSWLSVSALGSAPLPA 578

  Fly   593 QP--DVVWIRNINRS---------PDNK------------LERLSLRNYHLITNHTLEHLVQCSP 634
            ..  |:.||.::..|         ||.|            :..|.|....| |:.:|..|::.:|
  Rat   579 LRLLDLRWIEDVKDSQLRELLLPPPDTKPGQTESRGRLQGVAELRLAGLEL-TDASLRLLLRHAP 642

  Fly   635 NLVYIDVSGTS---------ITLPA--IRR--FKISKPKCEVVANH-LEEFERLPEL 677
            .|..:|:|..:         :|.|.  :|.  ..::...|..:.:| |..|.|.|.|
  Rat   643 QLSALDLSHCAHVGDPSVHLLTAPTSPLRETLVHLNLAGCHRLTDHCLPLFRRCPRL 699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5003NP_651593.1 F-box 69..111 CDD:425796
leucine-rich repeat 610..635 CDD:275381 6/24 (25%)
Fbxl19XP_006230338.1 zf-CXXC <95..122 CDD:366873
PHD_FXL19 132..193 CDD:277115
F-box_JHDM 466..508 CDD:438894 10/47 (21%)
AMN1 511..710 CDD:187754 36/190 (19%)
leucine-rich repeat 531..554 CDD:275381 1/22 (5%)
leucine-rich repeat 555..578 CDD:275381 2/22 (9%)
leucine-rich repeat 616..643 CDD:275381 6/27 (22%)
leucine-rich repeat 644..670 CDD:275381 5/25 (20%)
leucine-rich repeat 674..698 CDD:275381 5/23 (22%)
leucine-rich repeat 699..723 CDD:275381 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.

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