DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5003 and LOC110437745

DIOPT Version :9

Sequence 1:NP_651593.1 Gene:CG5003 / 43344 FlyBaseID:FBgn0039554 Length:713 Species:Drosophila melanogaster
Sequence 2:XP_021323868.1 Gene:LOC110437745 / 110437745 -ID:- Length:579 Species:Danio rerio


Alignment Length:456 Identity:92/456 - (20%)
Similarity:143/456 - (31%) Gaps:130/456 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 CGRELAAVP---VQPVLPQIPTEEEPEIKQRKREKEHKESLDRETECNLMD-FCD---------- 74
            |.||....|   :..|..||..:.: :::..:..:..:|:...|.|..|.. |||          
Zfish    52 CKREFEERPELSINRVFAQIALKYQ-QMRYGEAAQARQENPSAEAEPKLEPVFCDVCSGVKKPAL 115

  Fly    75 -ELLFEIFQYLDTSSILAVMHCSPRFEN-LLLDHRFYHHIDLSNGPL--PMGILEEILGRATEKT 135
             ..|.....|.||       |..|.... ....||.....|...|..  ..|.|.|:..| |::.
Zfish   116 RSCLTCTASYCDT-------HLQPHLHTPFYSTHRLLPPHDALRGRTCREHGRLLEVFCR-TDQR 172

  Fly   136 HTIKICGPPSSQHVAGEFRQFT----QTLSSVFPRVVQLKVLELEGVSLDFEYIHITEFPATLRR 196
            ....||       |..|.|..|    ||..::..|::....|||:        :.:....|.|..
Zfish   173 CICAIC-------VLEEHRTHTTVSVQTERALKQRLLGKMELELQ--------VCVDRRSAQLAE 222

  Fly   197 LKLKDCSVRVGDTPKSIFYSIELHLLDLEDLSIEDNSWFEPYYIMGLSKLPSLRRLSLKGCQALC 261
            ||.|..:|:        .|| :....::|.| :.|.|          |.:..:|...:.|.|   
Zfish   223 LKTKLLTVQ--------RYS-QAEQAEVEQL-LSDMS----------SSIQRIRSELVGGIQ--- 264

  Fly   262 KFVPYGSMAARFGFQKLESLDLRQTPINNSDLQCFSAIENLKELLLESPQILHSKQAVAKKNTNG 326
                                |.|:..|...  |...:.:..|...|:..:.....||::..:...
Zfish   265 --------------------DKREAVIGRG--QRMVSQQESKLAQLQEHRARLEAQAISDDHIGF 307

  Fly   327 NATDEAAS-PQPDSLKVLSDDEPS-TSRAAMEHLRACKVAFNLDNCSDRKEEKSPVPTEPPSEGQ 389
            ..:.:||| |..|.....::.|.. |.|.::..::|.     |....||.|:             
Zfish   308 LQSFQAASGPMQDEAGQEAEQEAELTLRFSLGDVKAA-----LGEIRDRLED------------- 354

  Fly   390 DLQAKRIRAPSESDDEDTSSTSGSSSDKLEVLSLPR------------NGHSNAAPLSGGVDLPP 442
                  ||: .|.....:.||...|...:.|.|:.|            .||.........|.|.|
Zfish   355 ------IRS-GEVQYRHSVSTLAESESMMSVRSMRRKDWSLKDLRRIKTGHKKVKGYLEDVSLNP 412

  Fly   443 L 443
            :
Zfish   413 V 413

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG5003NP_651593.1 F-box 68..114 CDD:279040 12/58 (21%)
leucine-rich repeat 610..635 CDD:275381
LOC110437745XP_021323868.1 RAD18 8..>99 CDD:333230 10/47 (21%)