DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5003 and fbxl18

DIOPT Version :10

Sequence 1:NP_651593.1 Gene:CG5003 / 43344 FlyBaseID:FBgn0039554 Length:713 Species:Drosophila melanogaster
Sequence 2:XP_002931545.1 Gene:fbxl18 / 100492578 XenbaseID:XB-GENE-980052 Length:692 Species:Xenopus tropicalis


Alignment Length:568 Identity:118/568 - (20%)
Similarity:191/568 - (33%) Gaps:211/568 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 NLMDFCDELLFEIFQYL-DTSSILAVMHCSPRFENLLLD---------HRFYH------------ 110
            |.::..||:|..|..|: .|..||.|.....:...|.||         |:.|.            
 Frog     2 NPIELSDEILLHILSYVPSTDLILNVKRTCHKLAGLCLDKSLIQKVILHKEYQASDNQVKQLLRE 66

  Fly   111 -------------------------------HIDLSNGPLPMGILEEILGRATEKTHTIKIC--- 141
                                           .:|||..||....|.::|      |...::|   
 Frog    67 AGKEIRELDMSGCYWLSSSTVDLIAQCKRLVRLDLSGCPLTSLRLSKLL------TDLHQLCSLS 125

  Fly   142 -----GPPSSQ----------HVAGEFRQFTQTLSS----VFPRVVQLKVLEL---------EGV 178
                 |..|.|          ||    |:..|||.:    |.|..:.|:.|.|         ||.
 Frog   126 IDIGAGFDSGQLTTECKATLRHV----RELKQTLFAPSYGVVPCCINLEKLLLYFEVLDRTREGT 186

  Fly   179 SLDFE----------YIHITEFPATLR---------RLKLKDCSVRVGDTPKSIFYSI------- 217
            .:..:          |.::..|.|.|.         ||.|...:.|..:..::...|:       
 Frog   187 VMSGQLMVGESKIPHYQNLRLFYARLAPGYINEEVVRLYLTVLTDRTPENLRAFLISVPGSLAES 251

  Fly   218 --ELHLLD--LEDLSIE----DNSWF------------EPYYIMGLSKLPSLRRLSLKGCQALCK 262
              ..:|||  .:::|:|    ..||.            .|:|:       |..|..:.|.| |.:
 Frog   252 SASKNLLDSMAKNVSLEAFQLPKSWLSGSSLLQNLKFSSPFYL-------SFSRSMISGGQ-LTQ 308

  Fly   263 FVPYGSMAARFGFQKLESLDLRQTPIN-NSDLQCFSAIEN-----LKELLLESPQILHSKQAVAK 321
            :|..|.|..|    .|.||:||..|.: ||||.....:|:     |:.|:...|.:.|...:.|.
 Frog   309 WVINGHMDCR----SLVSLNLRGCPFSLNSDLPFRKTVEDIDCNILETLVTACPNLAHLNLSYAH 369

  Fly   322 KNTNGNATDEAASPQPDSLKVLSDDEPSTSRAAMEHLRA-----CKVAFNLDNCSDRKEEKSPVP 381
            .:::.:||....    |.|            |.::|||:     |.:. |..|.:|:...:.|..
 Frog   370 HHSSESATRHLC----DIL------------AQLKHLRSLSLPVCAIV-NTSNTTDKSLIQCPGQ 417

  Fly   382 TEPPSEGQDLQAKRIRAPSESD-----DEDTSSTSGSSSD----KLEVL------SLPRNGHS-- 429
            :.|.:..... .|::|...:::     |:::|.......:    .||::      ::|||..:  
 Frog   418 STPRTATLGF-GKKVRIGVQTNSMTLPDQNSSFWKLLKENPFIVNLELIGSNFYSAMPRNDPAIR 481

  Fly   430 NAAPLSGGVDLPP--LPHA---ADAANAADAPIAVDAANIEAPGQSPG 472
            ||        .||  |.|:   |..||.:......:....:.||...|
 Frog   482 NA--------YPPCALSHSVGDAQIANISQLEFLQNLTLAQLPGIHTG 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5003NP_651593.1 F-box 69..111 CDD:425796 14/94 (15%)
leucine-rich repeat 610..635 CDD:275381
fbxl18XP_002931545.1 F-box_SF 3..46 CDD:459239 12/42 (29%)
leucine-rich repeat 18..43 CDD:275381 7/24 (29%)
leucine-rich repeat 44..68 CDD:275381 2/23 (9%)
FBXL18_LRR 60..649 CDD:466163 103/510 (20%)
leucine-rich repeat 71..95 CDD:275381 0/23 (0%)
leucine-rich repeat 96..120 CDD:275381 8/29 (28%)
leucine-rich repeat 320..359 CDD:275381 13/38 (34%)
leucine-rich repeat 360..389 CDD:275381 7/44 (16%)
leucine-rich repeat 507..533 CDD:275381 3/15 (20%)
leucine-rich repeat 534..563 CDD:275381
leucine-rich repeat 564..589 CDD:275381
leucine-rich repeat 590..616 CDD:275381
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.