DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5003 and fbxl12

DIOPT Version :10

Sequence 1:NP_651593.1 Gene:CG5003 / 43344 FlyBaseID:FBgn0039554 Length:713 Species:Drosophila melanogaster
Sequence 2:XP_002933934.2 Gene:fbxl12 / 100135148 XenbaseID:XB-GENE-942694 Length:350 Species:Xenopus tropicalis


Alignment Length:374 Identity:81/374 - (21%)
Similarity:137/374 - (36%) Gaps:84/374 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 DNERCGREL-----AAVPVQPVLPQIPTEEEPEIKQRKREKEHKESLDRETECNLMDFCDELLFE 79
            |.|.||..|     .||.::..:..:|:..|            ..|:......:.:.  |.:|.|
 Frog     5 DLEACGPVLTLMRKCAVSMETSMSALPSAAE------------NSSVSGTLALSWLP--DSVLLE 55

  Fly    80 IFQYLDTSSILAVMHCSPRFENLLLDHRFYHHIDLSNGPLPMGILEEIL-GRATEKTHTIKICGP 143
            :..:|....::.......|:..|::|...:.||:|:...|....|..:: .:......|:|:.|.
 Frog    56 VLSFLSIRDLVRSGRVCKRWRTLVMDKTLWRHINLTPYKLDSKTLWHLVRHKFVPSLQTLKLRGT 120

  Fly   144 PSSQHVAGEFRQFTQTLSSVFPRVVQLKVLELEGVSL-DFEYIHITEFPATLRRLKLKDCSV--- 204
            ..|.. ..||.... .|..:..|...|:.|.||..:| ...|.|   ||:||:.|:|..|.:   
 Frog   121 LRSVK-KQEFLTMA-VLKEIESRFHNLETLHLEQTNLHSLSYCH---FPSTLKTLQLNQCELPAN 180

  Fly   205 ------RVGDT-PKSIFYSIELHLLDLEDLSIEDNSWFEPYYIMGLSKLPSLRRLS--------- 253
                  ..|.| ||            ||.|.:.....|..:::..:..|.:|:.||         
 Frog   181 WFKTPPNKGRTFPK------------LEHLFLNSVPSFSNHHLETICSLSALKTLSLCGTYRVTD 233

  Fly   254 ---------LKGCQAL----CKFVPYGSMAARFGFQKLESLDLRQ-TPINNSDLQCFSAIENLKE 304
                     |||.:.|    |..............:.|::|.|.. :.::::.|.|.|:::.|::
 Frog   234 AGIPDSLPHLKGLEHLKLQGCYISDITLHLIGCHLKHLQTLALTDVSSVSDAGLACLSSVKTLEK 298

  Fly   305 LLLE-SPQI-LHSKQAVAKK-----------NTNGNATDEAASPQPDSL 340
            |.|| |..: |:|..||..|           ...|...||.....|:.:
 Frog   299 LWLEYSTHLSLNSIIAVCGKLPALSYLHLNGTFEGRGIDELKKSLPNCM 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5003NP_651593.1 F-box 69..111 CDD:425796 7/41 (17%)
leucine-rich repeat 610..635 CDD:275381
fbxl12XP_002933934.2 F-box_FBXL12 45..86 CDD:438895 7/42 (17%)
leucine-rich repeat 60..84 CDD:275381 4/23 (17%)
leucine-rich repeat 85..107 CDD:275381 5/21 (24%)
leucine-rich repeat 112..144 CDD:275381 8/33 (24%)
LRR <140..>339 CDD:443914 50/213 (23%)
leucine-rich repeat 145..194 CDD:275381 16/51 (31%)
leucine-rich repeat 195..219 CDD:275381 5/23 (22%)
leucine-rich repeat 220..245 CDD:275381 4/24 (17%)
leucine-rich repeat 246..270 CDD:275381 2/23 (9%)
leucine-rich repeat 271..295 CDD:275381 6/23 (26%)
leucine-rich repeat 296..321 CDD:275381 10/24 (42%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.