DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12877 and SDN1

DIOPT Version :10

Sequence 1:NP_001034073.1 Gene:CG12877 / 43333 FlyBaseID:FBgn0039544 Length:991 Species:Drosophila melanogaster
Sequence 2:NP_190579.2 Gene:SDN1 / 824172 AraportID:AT3G50100 Length:409 Species:Arabidopsis thaliana


Alignment Length:189 Identity:61/189 - (32%)
Similarity:97/189 - (51%) Gaps:10/189 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   799 YANYHVSDYYDPEKLTCFVKTIERGEEFVPTKKDIYALDCEMCYTTHGIE-LTRVTVVDINGRSV 862
            :.:|.:...:.|.....||..:....:.|....::.|:||||.....|.| |.||.|||.:.:.:
plant   106 HPSYSLDYSFKPYSEDWFVSDVGMKMKKVMESTNMVAVDCEMVLCEDGTEGLVRVGVVDRDLKVI 170

  Fly   863 YDALVKPDNQIVDYNTTYSGITEAMLSNETRTIRDVQAVLMSMFHAKTVLVGHSLESDLKALKLI 927
            .|..|||:..:|||.|..:|||...:.|.:.::.|:|..|.......|:||||||..||:.||:.
plant   171 LDEFVKPNKPVVDYRTDITGITAEDIENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKID 235

  Fly   928 HDVVVDTSVLFPHKMGPPKKRALKTLCIENL-KRI----IQESEAGHDSAEDAEVCIQL 981
            |..|:||:::|.:    |..|.|:...:.|| |.|    ::::...||...||...::|
plant   236 HPKVIDTALVFKY----PNTRKLRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKL 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12877NP_001034073.1 PTZ00121 <128..490 CDD:173412
PRK05035 <458..>583 CDD:481472
EloA-BP1 572..734 CDD:464914
REX1_like 834..983 CDD:99848 56/154 (36%)
SDN1NP_190579.2 REX1_like 141..292 CDD:99848 56/154 (36%)
RRM_SF 317..377 CDD:409669
Blue background indicates that the domain is not in the aligned region.

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