DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12877 and Rexo1

DIOPT Version :9

Sequence 1:NP_001034073.1 Gene:CG12877 / 43333 FlyBaseID:FBgn0039544 Length:991 Species:Drosophila melanogaster
Sequence 2:XP_011241832.1 Gene:Rexo1 / 66932 MGIID:1914182 Length:1228 Species:Mus musculus


Alignment Length:1296 Identity:343/1296 - (26%)
Similarity:516/1296 - (39%) Gaps:384/1296 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLPSTGLFKGFLCPYFDGQDAASCKRPFCHFKH-------------------------------- 33
            ||.|||.|:...|||:.|.....|:||:|||:|                                
Mouse     1 MLRSTGFFRSIDCPYWAGAPGGPCRRPYCHFRHRGARGPGAPGSGGAASPASGLGYDPYNPELPQ 65

  Fly    34 ---------------------------ARKDELE---------------------AAPPAEP--- 47
                                       |.:.|:|                     |..|..|   
Mouse    66 PPVQRENGALGQGDGMLELELVNQAIEAVRGEVELEQRRYQELLETARGHSAGPSALAPCSPATS 130

  Fly    48 -------------------SPVPKYKPAPKLLSLPLP---QITLCAPRKKSN---------LEYH 81
                               ||...|:|.|  |::|..   :.:| ||..:|.         |||.
Mouse   131 IDDDDTFSLALTYTPGGLLSPDAAYQPTP--LAVPAEPGHKYSL-APSDRSQGRAAGGAGALEYV 192

  Fly    82 PE----------------------KPALDA----------------------------------- 89
            |:                      ||:.|.                                   
Mouse   193 PKAVGQPRRCGRPVSGGKYVVDSSKPSTDLEYDPLSNYSARHLGRASARDERATKRPRGSRGAEP 257

  Fly    90 -SPAKKK--------------QEASVDSAPK--------------YVPGQPSVTNGEEYDDWQAV 125
             :||.||              .|..|.|.||              ..||:|....|.|::|....
Mouse   258 YTPALKKPCDPFGGCEARFSDSEDDVTSPPKADVSSPKAGADPESKAPGKPVSKEGREHEDGGLR 322

  Fly   126 LEKEIDEQMQVEIEEQVQNNDEEQKIDTVAENEEDQENTQLTDARDSHEKDRKPSKERERDIEKK 190
            ..||:  .:|.::|:..|.......:..|...         :.||.|  :|.:..||.    :.|
Mouse   323 GTKEM--AVQYDVEDLGQPPKAPDTVSVVKPG---------SPARAS--QDARVPKEG----KAK 370

  Fly   191 KIRELKREKIKDRDRDRDRDREKDKEKSKERDREKEKNDRDKRKSSH-----SDKERSKERNTSS 250
            |.:......:..:|:.|.:|::|:|:.::.|.:||...|:.|..:|:     ...|.:|::.:|:
Mouse   371 KKKSGTSASLSHKDKVRKKDKKKEKDPARPRGKEKVCTDKKKLPASNPRGKAQGPEGTKKKPSSA 435

  Fly   251 ---SSSSKHKSSSSSSSSKKSSSSDKHRD--DKSSSSRHKSSSSSSSSKSHHHKSSSSSSRSKTK 310
               :||.|..|...||:..:.|....|..  .|:.|::..||......|:......:.....|.|
Mouse   436 TTVASSGKGGSGRPSSTGPQDSGPGPHAPLAWKAGSAKKMSSGKLVERKARSLDEGAPQDTPKLK 500

  Fly   311 R--------------SSSSSKSAGTSK----------SEPEADKDTEAAV-----------LTPA 340
            :              ...||..||..:          |:.|:|.|:...:           ..||
Mouse   501 KRALSHAELFGDESEEEDSSLGAGAPRVWPPTLPSLSSDSESDSDSSLGLDETKVPKRLKAAPPA 565

  Fly   341 EPM-------------------DDLD----DMDFDFEADTSEGEIVRQCEMIFDEMEKKFAQMHK 382
            .|:                   :|:|    :.:.||:.|..|     :|..||:|   ..:...:
Mouse   566 SPVPPSPLSSSSSSSGASQCAEEDVDYSALEKEVDFDVDPME-----ECLRIFNE---STSVKTE 622

  Fly   383 DEGGNANPESSRKRKAPSPDIDTFTEAATAAL---QKRRVAH-------ENADKITPHLAPSAAM 437
            |:|..|       |:.|....:..|.|....|   |||||:|       ..|.|.|| :||.|  
Mouse   623 DKGRLA-------RQPPKEKAEEKTHAGLTTLFPGQKRRVSHLCKPGKESEAPKRTP-VAPPA-- 677

  Fly   438 RKPNHVRNAMQAIFNRRAELRRQEK---LQAEASAEQVRQAQERVRQAQEELRQAKV-NSNL--T 496
            |.|     ..|.:..|||:|.:::.   ||| |.....|.:...:....|:.|.|.| |..|  .
Mouse   678 RPP-----TAQEVCYRRAQLAQRDSASWLQA-APRPTERLSSVHISAPGEKRRIAHVPNPRLAAA 736

  Fly   497 PLISRSALTPPVRSARSIAPVANIVAIARAKKKIEELQAEKKPAFTPAQSFKGAGRVAHKPTAAL 561
            |..::.||:.. .|..|..|......:  ..:.:..:.::.....||.       |:||.|:   
Mouse   737 PTGAKRALSAS-SSQASHGPEPGSQPL--KTRTLSGMASKTTTTVTPK-------RIAHSPS--- 788

  Fly   562 DKAAPVSNAEKPTVLDPSSSKISYNVRIQYYEMMVRHCTVIYPQLADAWERAQVEELTVFKKCNT 626
                 :.:.:||.:......|:...||.:|..:.:..|........:|.|:|..||...:.:..:
Mouse   789 -----LQSLKKPVIPKEFGGKVPTVVRQRYLNLFIEECLKFCSSNQEAIEKALNEEKVAYDRSPS 848

  Fly   627 PAIYKNSCMLAINKLRK-EALEAGNKPSVAC-----------KTVSHEMMLGGKRALTTSWSVEK 679
            ..||.|   :|:|.|:| ..|.....|:::.           :.||||::||||.|..||:|:.:
Mouse   849 KNIYLN---VAVNTLKKLRGLVPNTVPNLSTFLYFLLEASGRRVVSHEVVLGGKLAAKTSFSLSR 910

  Fly   680 KG-----KLSSLGNGEPFDALDAEKAYKMVFDLRLTEEQLVENGYPRPGDKR-GSAVIRACRPNR 738
            ..     :|.:|.:..|    .....|..:.:..||:|||.|||||.|..:| |.|:|......:
Mouse   911 PSSPRVEELKALTHSAP----AGTALYSRLREYLLTQEQLKENGYPFPHPERPGGAIIFTAEEKK 971

  Fly   739 RPNQKERYCSRCGKVFSLD-----IYEHQSFDMCNYHPKSTGYRR--GFTDHQHRCCQQPAGTPG 796
            ..:...|.|.|||..:.:.     :...:    |.||.......|  |..:.|:.||....|:.|
Mouse   972 PKDPSCRICCRCGTEYLVSSSGRCVRSEE----CYYHWGRLRRNRVAGGWETQYMCCSAAVGSVG 1032

  Fly   797 CTYANYHVSDYYDPEKLTCFVKTIERGEEFVPTKKDIYALDCEMCYTTHGIELTRVTVVDINGRS 861
            |..|..||.| ...|.|..||:|.:: |........::||||||.|||:|:|||||||||.:.:.
Mouse  1033 CQVAKQHVQD-GRKENLEGFVRTFQK-ELPEDAHAGVFALDCEMSYTTYGLELTRVTVVDTDMQV 1095

  Fly   862 VYDALVKPDNQIVDYNTTYSGITEAMLSNETRTIRDVQAVLMSMFHAKTVLVGHSLESDLKALKL 926
            |||..|||||::|||||.:||:|||.|.:.:.|:|||||||:|||.|.|:|:||||||||.|||:
Mouse  1096 VYDTFVKPDNEVVDYNTRFSGVTEADLVDTSITLRDVQAVLLSMFSADTILIGHSLESDLLALKV 1160

  Fly   927 IHDVVVDTSVLFPHKMGPPKKRALKTLCIENLKRIIQESEAGHDSAEDAEVCIQLIKYYLR 987
            ||..||||||||||::|.|.||:|:.|..:.|::|||::..||.|:|||..|:.|:.:.:|
Mouse  1161 IHGTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDASACMHLVIWKIR 1221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12877NP_001034073.1 CDC45 129..>199 CDD:280821 13/69 (19%)
EloA-BP1 572..736 CDD:292495 52/181 (29%)
REX1_like 834..983 CDD:99848 93/148 (63%)
DnaQ 847..>991 CDD:223916 84/141 (60%)
Rexo1XP_011241832.1 PHA03307 150..>461 CDD:223039 68/330 (21%)
EloA-BP1 794..969 CDD:374185 52/181 (29%)
REX1_like 1068..1216 CDD:99848 92/147 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 221 1.000 Domainoid score I2593
eggNOG 1 0.900 - - E1_COG0847
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 317 1.000 Inparanoid score I2528
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002085
OrthoInspector 1 1.000 - - oto92616
orthoMCL 1 0.900 - - OOG6_103246
Panther 1 1.100 - - LDO PTHR12801
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2254
SonicParanoid 1 1.000 - - X1541
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.850

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