DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12877 and REXO4

DIOPT Version :9

Sequence 1:NP_001034073.1 Gene:CG12877 / 43333 FlyBaseID:FBgn0039544 Length:991 Species:Drosophila melanogaster
Sequence 2:NP_065118.2 Gene:REXO4 / 57109 HGNCID:12820 Length:422 Species:Homo sapiens


Alignment Length:538 Identity:117/538 - (21%)
Similarity:171/538 - (31%) Gaps:191/538 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   488 QAKVNSNLTPLISRSALTPPVRSARSIAPVANIVAIARAKK----KIEELQAEKKPAFTPAQSFK 548
            :|||.:      |:.|.:.||...   .||..:......||    |.:..:..||||       .
Human     3 KAKVPA------SKRAPSSPVAKP---GPVKTLTRKKNKKKKRFWKSKAREVSKKPA-------S 51

  Fly   549 GAGRVAHKPTAALDKAAPVSNAEKPTVLDPSSSKISYNVRIQYYEMMVRHCTVIYPQLADAWERA 613
            |.|.|...|.|..|                    .|.|                       |:..
Human    52 GPGAVVRPPKAPED--------------------FSQN-----------------------WKAL 73

  Fly   614 QVEELTVFKKCNTPAIYKNSCMLAINKLRKEALEAGNKPSVACKTVSHEMMLGGKRALTTSWSVE 678
            |                        ..|.|:..:|..||.|..:       :|.|          
Human    74 Q------------------------EWLLKQKSQAPEKPLVISQ-------MGSK---------- 97

  Fly   679 KKGKLSSLGNGEPFDALDAEKAYKMVFDLRLTEEQLVENGYPRPGDKRGSAVIRACRPNRRPNQK 743
            ||.|:......|....:..|       ::...::|....|....|.|...   ||..|..:.:..
Human    98 KKPKIIQQNKKETSPQVKGE-------EMPAGKDQEASRGSVPSGSKMDR---RAPVPRTKASGT 152

  Fly   744 ERYCSRCGKVFSLDIYEHQSFDMCNYHPKSTGYR--------RGFTDHQHRCCQQPAGTPGCTYA 800
            |                        ::.|.|..|        ||..:|:.|..::.|..|. |..
Human   153 E------------------------HNKKGTKERTNGDIVPERGDIEHKKRKAKEAAPAPP-TEE 192

  Fly   801 NYHVSDYYDPEKLTCFV---------KTIERGEEFVP---TKKDIY-------ALDCEMCYTTHG 846
            :....| .||..:...:         |.:.:.|..|.   .|:..:       ||||||.    |
Human   193 DIWFDD-VDPADIEAAIGPEAAKIARKQLGQSEGSVSLSLVKEQAFGGLTRALALDCEMV----G 252

  Fly   847 I-------ELTRVTVVDINGRSVYDALVKPDNQIVDYNTTYSGITEAMLSNETRTIRDVQAVLMS 904
            :       ...||::|:..|:.|||..|||...:.||.|..|||....| .:...:..||..:..
Human   253 VGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL-KQGEELEVVQKEVAE 316

  Fly   905 MFHAKTVLVGHSLESDLKALKLIH--DVVVDTSVLFPH----KMGPPKKRALKTLCIENLKRIIQ 963
            |...: :||||:|.:|||.|.|.|  ..:.||....|.    |.|.|..|.|....:.     :|
Human   317 MLKGR-ILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGRPSLRLLSEKILG-----LQ 375

  Fly   964 ESEAGHDSAEDAEVCIQL 981
            ..:|.|.|.:||:..::|
Human   376 VQQAEHCSIQDAQAAMRL 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12877NP_001034073.1 CDC45 129..>199 CDD:280821
EloA-BP1 572..736 CDD:292495 23/163 (14%)
REX1_like 834..983 CDD:99848 53/168 (32%)
DnaQ 847..>991 CDD:223916 46/148 (31%)
REXO4NP_065118.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..194 57/325 (18%)
REX4_like 244..394 CDD:99847 53/161 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0847
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.