DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12877 and Pan2

DIOPT Version :9

Sequence 1:NP_001034073.1 Gene:CG12877 / 43333 FlyBaseID:FBgn0039544 Length:991 Species:Drosophila melanogaster
Sequence 2:NP_001382635.1 Gene:Pan2 / 408200 RGDID:1303301 Length:1207 Species:Rattus norvegicus


Alignment Length:460 Identity:107/460 - (23%)
Similarity:174/460 - (37%) Gaps:107/460 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   593 EMMVRHCTVIYPQLADAWERAQVEELTVFKKCNTPAIYKNSCMLAINKL-----RKEALEAGNK- 651
            :::|.:|.|...:.||.| |.|.|  ..||             :|:.|.     .||...|..| 
  Rat   738 DILVINCEVNSSKEADFW-RLQAE--VAFK-------------IAVKKFGGEVKSKEFALADRKE 786

  Fly   652 ---PS--VACKTV----------SHEMMLGGKRAL-TTSWSVEKKGKLSSLGNGEPFDALDAEKA 700
               |.  :.|.::          |..|.:...:.| ..:|:.|.  :|||||....:....||:.
  Rat   787 LRSPEGFLCCSSMEELKNVWLPFSIRMKMTKNKGLDVCNWADEH--ELSSLGTPSQWGPARAEEE 849

  Fly   701 YKM-VFDLRLTEEQLVENGYPRPGDKRGSAVIRACRPNRRPNQKER-------YCSRCGKVFSLD 757
            :.: |:||..|...::::       :.|.:::...:.....:|::.       |......:..:|
  Rat   850 HGVYVYDLMATVVHILDS-------RTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPID 907

  Fly   758 IYEHQSFDMCNYHPKSTGY--RRGFTDHQHRCCQQPAGTPGCTYANYHVSDYYDPEKL----TCF 816
            .||...||| |:...:..|  :|......:...:.|      ..|:..:::.....|.    |.|
  Rat   908 KYEAVQFDM-NWKVPAILYYVKRNLNSRYNLNIKNP------IEASVLLAEASLARKQRKTHTTF 965

  Fly   817 VKTIERGEEFVPTKKDIYALDCEMCY------------TTHGIELTRVTVVDI---------NGR 860
            :..:...   :|...|:..||.|...            |...|:.::::|..|         .|.
  Rat   966 IPLMLNE---MPQVGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGI 1027

  Fly   861 SVYDALVKPDNQIVDYNTTYSGITEAML-----SNETRTIRDVQAVLMSMFHAKTVLVGHSLESD 920
            ...|..:....|:|||.|.||||....|     |....|::.....|..:.......|||.|:.|
  Rat  1028 PFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQKD 1092

  Fly   921 LKALKLI--HDVVVDTSVLFPHKMGPPKKR--ALKTLCIENLKRIIQESEAGHDSAEDAEVCIQL 981
            .:.:.|:  .|.|:||..|| |.   |:||  :|:.|....|...||...  |||.|||...:||
  Rat  1093 FRVINLMVPKDQVLDTVYLF-HM---PRKRMISLRFLAWYFLDLKIQGET--HDSIEDARTALQL 1151

  Fly   982 IKYYL 986
            .:.||
  Rat  1152 YRKYL 1156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12877NP_001034073.1 CDC45 129..>199 CDD:280821
EloA-BP1 572..736 CDD:292495 36/165 (22%)
REX1_like 834..983 CDD:99848 51/178 (29%)
DnaQ 847..>991 CDD:223916 49/158 (31%)
Pan2NP_001382635.1 WD 1. /evidence=ECO:0000255|HAMAP-Rule:MF_03182 153..193
WD 2. /evidence=ECO:0000255|HAMAP-Rule:MF_03182 195..231
WD 3. /evidence=ECO:0000255|HAMAP-Rule:MF_03182 244..280
WD 4. /evidence=ECO:0000255|HAMAP-Rule:MF_03182 328..367
Linker. /evidence=ECO:0000255|HAMAP-Rule:MF_03182 368..484
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0847
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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