DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12877 and Rexo1l1-ps1

DIOPT Version :9

Sequence 1:NP_001034073.1 Gene:CG12877 / 43333 FlyBaseID:FBgn0039544 Length:991 Species:Drosophila melanogaster
Sequence 2:XP_006232420.1 Gene:Rexo1l1-ps1 / 295047 RGDID:1564472 Length:619 Species:Rattus norvegicus


Alignment Length:757 Identity:212/757 - (28%)
Similarity:279/757 - (36%) Gaps:300/757 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 TSSSSSSKHKSSSSSSSSKKSSSSDKHRDDKSSSSRHKSSSSSSSSKSHHHKSSSSSSRSKTKRS 312
            |.::|||...||||||||..||||       |||:...||||||||     .|||:|:|.|.:..
  Rat    87 TLTTSSSTASSSSSSSSSAASSSS-------SSSAMSSSSSSSSSS-----LSSSASAREKRRLI 139

  Fly   313 SSSSKSAGTSKSEPEADKDTEAAVLTPAEPMDDLDDMDFDFEADTSEGEIVRQCEMIFDEMEKKF 377
            .:||.|..          :|.||..|              |.:..:.|:                
  Rat   140 HTSSPSLA----------NTTAAKRT--------------FSSSIATGQ---------------- 164

  Fly   378 AQMHKDEGGNANPESSRKRKAPSPDIDTFTEAATAALQKRRVAHENADKITPHLAPSAAMRKPNH 442
                                  .|.::|:.                   :||             
  Rat   165 ----------------------PPHLNTYI-------------------VTP------------- 175

  Fly   443 VRNAMQAIFNRRAELRRQEKLQAEASAEQVRQAQERVRQAQEELRQAKVNSNLTPLISRSALTPP 507
                .|.|::                                                       
  Rat   176 ----QQVIYS------------------------------------------------------- 181

  Fly   508 VRSARSIAPVANIVAIARAKKKIEELQAEKKPAFTPAQSFKGAGRVAHKPTAALDKAAPVSNAEK 572
                      ..::.:             |||..|  :.||                        
  Rat   182 ----------YTLIGV-------------KKPVLT--KEFK------------------------ 197

  Fly   573 PTVLDPSSSKISYNVRIQYYEMMVRHCTVIYPQLADAWERAQVEELTVFKKCNTPAIYKNSCMLA 637
                    .||...:|..|..:....|........:|.|:||.||..::.:..:...|.|..:..
  Rat   198 --------DKIPVAMRQHYLGLFTEECLKFSSSHLEAIEKAQSEEKVIYDRSPSKNKYLNVALHT 254

  Fly   638 INKLRKEALEAGNKPSVACKTVSHEMMLGGKRALTTSWSVEKKGKLSSLGNGEPFDALDAEKAYK 702
            :.|||      |..||.                                     ...|.....|.
  Rat   255 LKKLR------GLVPSA-------------------------------------IPGLSKATLYS 276

  Fly   703 MVFDLRLTEEQLVENGYP--RPGDKRGSAVIRACRPNRRP-NQKERYCSRCGKVFSLDIYEH-QS 763
            .:....|||||...:|:|  .| :|.|||::..   ..:| :...|.|.|||..|.:..... .|
  Rat   277 RLQGYLLTEEQRKVHGFPFAHP-EKPGSAMLYT---REQPLSTAHRTCCRCGNKFLVSSSGRCLS 337

  Fly   764 FDMCNYH-------PKSTGYRRGFTDHQHRCCQQPAGTPGCTYANYHVSDYYDPEKLTCFVKTIE 821
            .:.|.||       |...|::     .::.||..|.|..||..|..||.| ...:.|..|.||. 
  Rat   338 SEPCVYHWGRVLSNPVQGGWQ-----VRYSCCSAPMGATGCKVAKQHVQD-GRKDNLHGFAKTF- 395

  Fly   822 RGEEFVPTKKD------IYALDCEMCYTTHGIELTRVTVVDINGRSVYDALVKPDNQIVDYNTTY 880
                   .|||      ||||||||.|||||:|||||||||.:...:||..|||||:||||||.:
  Rat   396 -------PKKDWEAHAGIYALDCEMSYTTHGLELTRVTVVDTDQHVIYDTFVKPDNEIVDYNTMF 453

  Fly   881 SGITEAMLSNETRTIRDVQAVLMSMFHAKTVLVGHSLESDLKALKLIHDVVVDTSVLFPHKMGPP 945
            ||:||..|:|....:.||||||:|:|..:|:|:||||||||.|||.||..||||||||||..|||
  Rat   454 SGVTETDLANTRVRLCDVQAVLLSLFSTETILIGHSLESDLLALKFIHGTVVDTSVLFPHHRGPP 518

  Fly   946 KKRALKTLCIENLKRIIQESEAGHDSAEDAEVCIQLIKYYLR 987
            .||:|:.|..:.|.||||....||.|.|||..|:||:.:.::
  Rat   519 FKRSLRGLTSQYLNRIIQTDSGGHSSIEDATACMQLVTWKIQ 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12877NP_001034073.1 CDC45 129..>199 CDD:280821
EloA-BP1 572..736 CDD:292495 33/165 (20%)
REX1_like 834..983 CDD:99848 94/148 (64%)
DnaQ 847..>991 CDD:223916 82/141 (58%)
Rexo1l1-ps1XP_006232420.1 EloA-BP1 189..308 CDD:292495 38/196 (19%)
REX1_like 407..555 CDD:99848 93/147 (63%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 219 1.000 Domainoid score I2557
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002085
OrthoInspector 1 1.000 - - otm44877
orthoMCL 1 0.900 - - OOG6_103246
Panther 1 1.100 - - O PTHR12801
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1541
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.910

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